Browse Element(s) Details


OsAffx.12251.1.S1_at

Description tigr:9630.m02695
TID=OsAffx.12251.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2831011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28240OsAffx.12252.1.S1_at11/112+16701967..16703216Transferase family protein
LOC_Os02g28240OsAffx.12252.3.S1_x_at2/112+16701967..16703216Transferase family protein
LOC_Os02g28250Os.26886.6.S1_s_at9/112+16704090..16707184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28250Os.26886.2.S1_s_at8/112+16704090..16707184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28250OsAffx.3425.1.S1_at1/112+16704090..16707184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28250OsAffx.5348.1.S1_at1/112+16704090..16707184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28260Os.26886.3.S1_x_at4/112+16708471..16709810transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28270NANA2+16712881..16713213hypothetical protein
LOC_Os02g28280OsAffx.12250.2.S1_at11/112+16715345..16717026hypothetical protein
LOC_Os02g28280OsAffx.12250.1.S1_at5/112+16715345..16717026hypothetical protein
LOC_Os02g28290OsAffx.2774.1.S1_at11/112+16717763..16718276hypothetical protein
LOC_Os02g28300NANA2+16720505..16722125Transferase family protein
LOC_Os02g28310OsAffx.12251.1.S1_at11/112+16726719..16728761hypothetical protein
LOC_Os02g28320NANA2+16730663..16733116retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28330OsAffx.20387.1.S1_x_at2/112+16734046..16740439retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28340Os.14332.1.S1_at11/112+16744207..16745895Transferase family protein, expressed
LOC_Os02g28340OsAffx.12252.2.S1_x_at2/112+16744207..16745895Transferase family protein, expressed
LOC_Os02g28350OsAffx.19542.3.S1_x_at4/112+16750810..16754575retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g28350OsAffx.28278.1.S1_at1/112+16750810..16754575retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12251.1.S1_at--715--3951Chr02:16727221..16727245 (25 bp)
CGGACCCTGCGTACGCTGATGGCGC
LOC_Os02g28310
OsAffx.12251.1.S1_at--997--9451Chr02:16727185..16727209 (25 bp)
TCGGCCACGTGGACCAGCTGTGCGA
LOC_Os02g28310
OsAffx.12251.1.S1_at--138--3351Chr02:16727180..16727204 (25 bp)
CACGTGGACCAGCTGTGCGACGCCA
LOC_Os02g28310
OsAffx.12251.1.S1_at--253--8551Chr02:16727113..16727137 (25 bp)
TGGAGGAGGTCGTGGGTTTCCTCGG
LOC_Os02g28310
OsAffx.12251.1.S1_at--1028--2351Chr02:16727086..16727110 (25 bp)
AAACCAAGGCCATCGGCCGCAGTTG
LOC_Os02g28310
OsAffx.12251.1.S1_at--814--9132Chr02:16727063..16727087 (25 bp)
TGCGTGCGGCGGCTGACCGATGCGG
LOC_Os02g28310
OsAffx.12251.1.S1_at--587--6011Chr02:16726893..16726917 (25 bp)
GAGAGCAGCTGGTCACACTCGACAC
LOC_Os02g28310
OsAffx.12251.1.S1_at--717--6671Chr02:16726860..16726884 (25 bp)
GTTGCTCGACCACGCCCTGCAGGAG
LOC_Os02g28310
OsAffx.12251.1.S1_at--987--971Chr02:16726840..16726864 (25 bp)
AGGAGACCAACGCTAGCATCCACGC
LOC_Os02g28310
OsAffx.12251.1.S1_at--1152--1971Chr02:16726807..16726831 (25 bp)
ACTGCGCTCGAGGTTACCTTGCCGG
LOC_Os02g28310
OsAffx.12251.1.S1_at--567--3792Chr02:7204706..7204730 (25 bp)
CTCCGGCTTGACTCCGGGAAGATGA
NONE
Target Sequence 
CGGACCCTGCGTACGCTGATGGCGCGGTGGGGTTCGTCGGCCACGTGGACCAGCTGTGCGACGCCATCGAGGAGGCGGTG
GCGCGTGGGGACGAGGCCGTGAGGAGGGTGGAGGAGGTCGTGGGTTTCCTCGGCCAAACCAAGGCCATCGGCCGCAGTTG
CGTGCGGCGGCTGACCGATGCGGTGGCGGCGGCGCTGCGCGCGGTGTATGAGGCGGAGGCGGAGGAGATGCGCTTCGAGG
GCCCTCTCGACGAGGCGCTGCTCGACCTCCAGGACCTCTTCGAGGCGGCGAGGAGGCGGTCGGAGAGGCCCGCCACGATG
GGGAAGAAGAGAGCAGCTGGTCACACTCGACACCCAGCTGCGTTGCTCGACCACGCCCTGCAGGAGACCAACGCTAGCAT
CCACGCTGCGCTCGACTGCGCTCGAGGTTACCTTGCCGGCAAGCTCCCTCTCCGGCTTGACTCCGGGAAGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12251.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis