Browse Element(s) Details


OsAffx.12265.1.S1_at

Description tigr:9630.m02777
TID=OsAffx.12265.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2911011/11ankyrin-like protein, putative
LOC_Os02g290302/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29050NANA2+17203880..17205976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g29060NANA2+17207503..17208818retrotransposon protein, putative, unclassified
LOC_Os02g29070OsAffx.12264.1.S1_at11/112+17211664..17212593Protein kinase domain containing protein
LOC_Os02g29080OsAffx.24488.1.S1_at11/112+17214377..17214919hypothetical protein
LOC_Os02g29080OsAffx.30320.1.S1_x_at1/112+17214377..17214919hypothetical protein
LOC_Os02g29090Os.55156.1.S1_at11/112+17217744..17221458expressed protein
LOC_Os02g29100OsAffx.24489.1.S1_at11/112+17223153..17227085Heat shock protein STI, putative
LOC_Os02g29110OsAffx.12265.1.S1_at11/112+17229669..17230425ankyrin-like protein, putative
LOC_Os02g29120NANA2+17238521..17238862hypothetical protein
LOC_Os02g29130Os.57050.1.S1_at11/112+17239164..17249009ankyrin-like protein, putative, expressed
LOC_Os02g29140OsAffx.2784.1.S1_s_at11/112+17252090..17260194ankyrin-like protein, putative, expressed
LOC_Os02g29140Os.16796.1.S1_at10/112+17252090..17260194ankyrin-like protein, putative, expressed
LOC_Os02g29140Os.16796.1.S1_x_at10/112+17252090..17260194ankyrin-like protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12265.1.S1_at--1139--4231Chr02:17229999..17230023 (25 bp)
CCGTTTGCGGGTACCTGCTCGAGGA
LOC_Os02g29110
OsAffx.12265.1.S1_at--188--4811Chr02:17229983..17230007 (25 bp)
GCTCGAGGAGCTTCGTGTGGATATT
LOC_Os02g29110
OsAffx.12265.1.S1_at--615--10611Chr02:17229972..17229996 (25 bp)
TTCGTGTGGATATTGACGCCGTCGA
LOC_Os02g29110
OsAffx.12265.1.S1_at--383--1831Chr02:17229961..17229981 (21 bp)
ACGCCGTCGAGGACAGAGGTGAAAC
LOC_Os02g29110
OsAffx.12265.1.S1_at--1150--7351Chr02:17229784..17229808 (25 bp)
GTGAAACGGCCTTGACATTTGCGAT
LOC_Os02g29110
OsAffx.12265.1.S1_at--400--5671Chr02:17229771..17229795 (25 bp)
GACATTTGCGATCAATTCCGGGAAT
LOC_Os02g29110
OsAffx.12265.1.S1_at--140--3032Chr02:17229749..17229773 (25 bp)
AATGCGGACATGGTGCGGTATCTTC
LOC_Os02g29110
OsAffx.12265.1.S1_at--45--5672Chr02:17229743..17229767 (25 bp)
GACATGGTGCGGTATCTTCTTGATC
LOC_Os02g29110
OsAffx.12265.1.S1_at--52--3631Chr02:17229725..17229749 (25 bp)
CTTGATCATGGAGCTGATACTGAAA
LOC_Os02g29110
OsAffx.12265.1.S1_at--81--4751Chr02:17229713..17229737 (25 bp)
GCTGATACTGAAAAGCTCAACAACG
LOC_Os02g29110
OsAffx.12265.1.S1_at--498--1571Chr02:17229700..17229724 (25 bp)
AGCTCAACAACGATGGACTTACTGT
LOC_Os02g29110
Target Sequence 
CCGTTTGCGGGTACCTGCTCGAGGAGCTTCGTGTGGATATTGACGCCGTCGAGGACAGAGGTGAAACGGCCTTGACATTT
GCGATCAATTCCGGGAATGCGGACATGGTGCGGTATCTTCTTGATCATGGAGCTGATACTGAAAAGCTCAACAACGATGG
ACTTACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12265.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis