Browse Element(s) Details


OsAffx.12270.1.S1_at

Description tigr:9630.m02802
TID=OsAffx.12270.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g293509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29300Os.27557.1.S1_at10/112+17400342..17405250expressed protein
LOC_Os02g29310OsAffx.2791.1.S1_at11/112+17409434..17409856hypothetical protein
LOC_Os02g29320OsAffx.2792.1.S1_s_at11/112+17410542..17413326expressed protein
LOC_Os02g29330OsAffx.22940.2.S1_s_at11/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.1.S1_s_at11/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.5.S1_x_at10/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.5.S1_at10/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.3.S1_x_at9/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.2.S1_at8/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330Os.35344.3.S1_x_at8/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330Os.35344.18.S1_x_at6/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.31552.2.S1_at1/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29340Os.25221.1.S1_at11/112+17422161..17425495HSF-type DNA-binding domain containing protein, expressed
LOC_Os02g29350OsAffx.12270.1.S1_at9/112+17429981..17431271hypothetical protein
LOC_Os02g29360Os.8066.1.S1_at2/112+17433950..17435646expressed protein
LOC_Os02g29370NANA2+17437564..17439723transposon protein, putative, Mariner sub-class, expressed
LOC_Os02g29380Os.11879.1.S1_at11/112+17440484..17449287expressed protein
LOC_Os02g29390OsAffx.12271.1.S1_at11/112+17450426..17451311hypothetical protein
LOC_Os02g29390OsAffx.2664.1.S1_at1/112+17450426..17451311hypothetical protein
LOC_Os02g29390Os.52777.1.S1_s_at1/112+17450426..17451311hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12270.1.S1_at--22--6151NONE
GAGGGTGCGCAGAGTAACTCATTCC
NONE
OsAffx.12270.1.S1_at--774--9151Chr02:17430912..17431173 (25 bp)
TGCGCAGAGTAACTCATTCCCCAAG
LOC_Os02g29350
OsAffx.12270.1.S1_at--953--6071Chr02:17430906..17430930 (25 bp)
GAGTAACTCATTCCCCAAGGCCCAT
LOC_Os02g29350
OsAffx.12270.1.S1_at--678--4391Chr02:17430877..17430901 (25 bp)
GCCACCCGCGGGTAGATTATGATCC
LOC_Os02g29350
OsAffx.12270.1.S1_at--694--7591Chr02:17430867..17430891 (25 bp)
GGTAGATTATGATCCCCAACCCCGT
LOC_Os02g29350
OsAffx.12270.1.S1_at--418--9671NONE
TCACCCGCGGGAATAGACTACGACA
NONE
OsAffx.12270.1.S1_at--616--8171Chr02:17430070..17430094 (25 bp)
GGAATAGACTACGACAAAAACTTAT
LOC_Os02g29350
OsAffx.12270.1.S1_at--294--2431Chr02:17430040..17430064 (25 bp)
AAAACGGATCGTGACCTCAATGCTA
LOC_Os02g29350
OsAffx.12270.1.S1_at--809--7371Chr02:17430030..17430054 (25 bp)
GTGACCTCAATGCTAGCCCTAATGG
LOC_Os02g29350
OsAffx.12270.1.S1_at--269--631Chr02:17430021..17430045 (25 bp)
ATGCTAGCCCTAATGGCATTGCCGT
LOC_Os02g29350
OsAffx.12270.1.S1_at--131--4291Chr02:17430013..17430037 (25 bp)
CCTAATGGCATTGCCGTGTTGGTGC
LOC_Os02g29350
Target Sequence 
GAGGGTGCGCAGAGTAACTCATTCCCCAAGGCCCATCTGGGCCACCCGCGGGTAGATTATGATCCCCAACCCCGTCCCCG
AAAATTTGCGGGGCCCCGCCTCTGCTCACCCGCGGGAATAGACTACGACAAAAACTTATTGAAAAAAACGGATCGTGACC
TCAATGCTAGCCCTAATGGCATTGCCGTGTTGGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12270.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis