Browse Element(s) Details


OsAffx.12284.1.S1_at

Description tigr:9630.m02859
TID=OsAffx.12284.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2991011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29870Os.54691.1.S1_x_at4/112+17754217..17762511Zinc knuckle family protein
LOC_Os02g29870OsAffx.26095.1.S1_at1/112+17754217..17762511Zinc knuckle family protein
LOC_Os02g29880OsAffx.8602.1.S1_x_at4/112+17764546..17767870retrotransposon protein, putative, unclassified
LOC_Os02g29880Os.46735.1.S1_at2/112+17764546..17767870retrotransposon protein, putative, unclassified
LOC_Os02g29880OsAffx.8602.1.S1_s_at1/112+17764546..17767870retrotransposon protein, putative, unclassified
LOC_Os02g29890Os.16031.1.S1_at11/112+17775171..17779646expressed protein
LOC_Os02g29900OsAffx.12283.1.S1_at11/112+17783307..17783663hypothetical protein
LOC_Os02g29910OsAffx.12284.1.S1_at11/112+17785321..17785560hypothetical protein
LOC_Os02g29910OsAffx.12284.1.S1_x_at11/112+17785321..17785560hypothetical protein
LOC_Os02g29920OsAffx.18122.1.S1_x_at1/112+17786702..17788467transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29930Os.10827.1.S1_x_at6/112+17789041..17790381transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29930Os.46055.2.S1_x_at5/112+17789041..17790381transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29940NANA2+17790935..17791576hypothetical protein
LOC_Os02g29950OsAffx.25936.7.S1_s_at11/112+17793080..17796561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29950OsAffx.25936.1.S1_s_at11/112+17793080..17796561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29950OsAffx.25936.2.S1_x_at8/112+17793080..17796561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29950OsAffx.25936.5.S1_x_at4/112+17793080..17796561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29950OsAffx.25936.1.S1_at1/112+17793080..17796561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g29960Os.18238.1.S1_at11/112+17799630..17803154Cytochrome P450 family protein, expressed
LOC_Os02g29960OsAffx.24503.1.S1_x_at11/112+17799630..17803154Cytochrome P450 family protein, expressed
LOC_Os02g29970OsAffx.24504.1.S1_at11/112+17804198..17804632hypothetical protein
LOC_Os02g29980NANA2+17807578..17807922glucan endo-1,3-beta-glucosidase 1 precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12284.1.S1_at--412--3851Chr02:17785506..17785530 (25 bp)
CTGCACTCCAAAATAATCTTATCCT
LOC_Os02g29910
OsAffx.12284.1.S1_at--1154--3071Chr02:17785495..17785519 (25 bp)
AATAATCTTATCCTTATGCAACGGG
LOC_Os02g29910
OsAffx.12284.1.S1_at--881--351Chr02:17785494..17785518 (25 bp)
ATAATCTTATCCTTATGCAACGGGT
LOC_Os02g29910
OsAffx.12284.1.S1_at--597--9751Chr02:17785493..17785517 (25 bp)
TAATCTTATCCTTATGCAACGGGTA
LOC_Os02g29910
OsAffx.12284.1.S1_at--998--3051Chr02:17785492..17785516 (25 bp)
AATCTTATCCTTATGCAACGGGTAC
LOC_Os02g29910
OsAffx.12284.1.S1_at--947--431Chr02:17785491..17785515 (25 bp)
ATCTTATCCTTATGCAACGGGTACT
LOC_Os02g29910
OsAffx.12284.1.S1_at--1160--653Chr07:17947837..17947859 (23 bp)
ATGCAACGGGTACTTGATCAACAAC
NONE
OsAffx.12284.1.S1_at--877--5133Chr07:17947835..17947859 (25 bp)
GCAACGGGTACTTGATCAACAACAC
NONE
OsAffx.12284.1.S1_at--659--3233Chr07:17947834..17947858 (25 bp)
CAACGGGTACTTGATCAACAACACC
NONE
OsAffx.12284.1.S1_at--705--4653Chr07:5685972..5686104 (25 bp)
GCGTGCAAGCCGCATTGCACTACCT
NONE
OsAffx.12284.1.S1_at--538--2031Chr02:17785379..17785403 (25 bp)
ACTACCTCCCGCTGCACTGTGCTGC
LOC_Os02g29910
Target Sequence 
CTGCACTCCAAAATAATCTTATCCTTATGCAACGGGTACTTGATCAACAACACCTTCTTCCAGCGACTTCAAGATGAGGA
CGAGCTTGGAGAATCCATGGGGATGCCTAGCGTGCAAGCCGCATTGCACTACCTCCCGCTGCACTGTGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12284.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis