Browse Element(s) Details


OsAffx.12286.1.S1_at

Description tigr:9630.m02888
TID=OsAffx.12286.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=stearoyl acyl carrier protein desaturase Lldd3A20
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3020010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30170OsAffx.2802.1.S1_at10/112+17922280..17923328hypothetical protein
LOC_Os02g30180Os.7844.1.S1_at11/112+17924881..17930544UBA/TS-N domain containing protein, expressed
LOC_Os02g30190OsAffx.2803.1.S1_at11/112+17942427..17945072hypothetical protein
LOC_Os02g30200Os.52877.1.S1_x_at10/112+17946161..17951487expressed protein
LOC_Os02g30200OsAffx.12286.1.S1_x_at10/112+17946161..17951487expressed protein
LOC_Os02g30200OsAffx.12286.1.S1_at10/112+17946161..17951487expressed protein
LOC_Os02g30200Os.52877.1.S1_at10/112+17946161..17951487expressed protein
LOC_Os02g30200Os.6862.2.A1_at1/112+17946161..17951487expressed protein
LOC_Os02g30210Os.28039.1.S1_at11/112+17952646..17955834beta scruin, putative, expressed
LOC_Os02g30219NANA2+17968142..17968511NA
LOC_Os02g30230Os.8406.1.S1_at11/112+17969446..17975001Exo70 exocyst complex subunit family protein, expressed
LOC_Os02g30230Os.8406.1.S2_at11/112+17969446..17975001Exo70 exocyst complex subunit family protein, expressed
LOC_Os02g30240Os.53579.1.S1_at11/112+17975638..17976666expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12286.1.S1_at--244--9831NONE
TAAAATTCTTAGAAGCTGATCCACG
NONE
OsAffx.12286.1.S1_at--448--4311Chr02:17946718..17946742 (25 bp)
CCAAGCTCTTCGAGGTGGACCCGGA
LOC_Os02g30200
OsAffx.12286.1.S1_at--1024--1551Chr02:17946715..17946739 (25 bp)
AGCTCTTCGAGGTGGACCCGGACTA
LOC_Os02g30200
OsAffx.12286.1.S1_at--57--9571Chr02:17946712..17946736 (25 bp)
TCTTCGAGGTGGACCCGGACTACAC
LOC_Os02g30200
OsAffx.12286.1.S1_at--273--991Chr02:17946706..17946730 (25 bp)
AGGTGGACCCGGACTACACGGTCAG
LOC_Os02g30200
OsAffx.12286.1.S1_at--276--1931Chr02:17946689..17946713 (25 bp)
ACGGTCAGGGCCTTCGCCCGCATGA
LOC_Os02g30200
OsAffx.12286.1.S1_at--329--711Chr02:17946668..17946692 (25 bp)
ATGATGCGCCGCAAGGTCGCCATGC
LOC_Os02g30200
OsAffx.12286.1.S1_at--1008--8851Chr02:17946667..17946691 (25 bp)
TGATGCGCCGCAAGGTCGCCATGCC
LOC_Os02g30200
OsAffx.12286.1.S1_at--458--591Chr02:17946647..17946671 (25 bp)
ATGCCGGCGCGCCTCATGTACGACG
LOC_Os02g30200
OsAffx.12286.1.S1_at--1094--7951Chr02:17946544..17946568 (25 bp)
GGATCATCGAGTTCCTCGTCGCGAG
LOC_Os02g30200
OsAffx.12286.1.S1_at--670--6431Chr02:17946543..17946567 (25 bp)
GATCATCGAGTTCCTCGTCGCGAGG
LOC_Os02g30200
Target Sequence 
TAAAATTCTTAGAAGCTGATCCACGAACGGAGAACGACCCGTACATGGGGTTCATCTACACGACGTTCCAGGAGCGCGCC
ACCTCCATCTCCCACGGCAACACGGCGCGCCACGCGGGGCGCCACGGCGACGCCGCCCTGGCCCGCGTCTGCGGCACCGT
CGCCGCCGACGAGAAGCGCCACGAGGCCGCCTACGCCGCCATCGTCGCCAAGCTCTTCGAGGTGGACCCGGACTACACGG
TCAGGGCCTTCGCCCGCATGATGCGCCGCAAGGTCGCCATGCCGGCGCGCCTCATGTACGACGGCGCCGACGACCGCCTC
TTCGCCCGCTTCGCCGCCGTCGCGCAGCGCCTCGGCGTGTACACCGCCGCCGACTACGCCGGGATCATCGAGTTCCTCGT
CGCGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12286.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis