Browse Element(s) Details


OsAffx.12328.1.S1_at

Description tigr:9630.m03147
TID=OsAffx.12328.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3315011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33120OsAffx.24551.1.S1_at11/112+19697600..19698067protein phosphatase 2C, putative
LOC_Os02g33130OsAffx.24552.1.S1_at11/112+19702791..19703462pectinesterase inhibitor domain containing protein, expressed
LOC_Os02g33140Os.9197.1.S1_at11/112+19704439..1970760040S ribosomal protein S14, putative, expressed
LOC_Os02g33150OsAffx.12328.1.S1_at11/112+19708656..19712863expressed protein
LOC_Os02g33160OsAffx.13041.1.S1_x_at3/112+19716165..19716922transposon protein, putative, unclassified
LOC_Os02g33160OsAffx.13041.1.S1_at1/112+19716165..19716922transposon protein, putative, unclassified
LOC_Os02g33160Os.28110.1.S1_x_at1/112+19716165..19716922transposon protein, putative, unclassified
LOC_Os02g33170NANA2+19718014..19718704hypothetical protein
LOC_Os02g33180OsAffx.24554.1.S1_s_at11/112+19721252..19724020Rar1, putative, expressed
LOC_Os02g33180Os.4686.1.S1_at11/112+19721252..19724020Rar1, putative, expressed
LOC_Os02g33180OsAffx.24554.1.S1_at8/112+19721252..19724020Rar1, putative, expressed
LOC_Os02g33190NANA2+19728096..19729943retrotransposon protein, putative, unclassified
LOC_Os02g33200OsAffx.21171.4.S1_x_at3/112+19734633..19736120retrotransposon protein, putative, unclassified
LOC_Os02g33200OsAffx.21171.4.S1_at2/112+19734633..19736120retrotransposon protein, putative, unclassified
LOC_Os02g33210NANA2+19736765..19738739retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12328.1.S1_at--950--331Chr02:19709302..19709326 (25 bp)
ATACACACTTCCAGATTCCAATTGC
LOC_Os02g33150
OsAffx.12328.1.S1_at--797--3171Chr02:19709320..19709344 (25 bp)
CAATTGCTCATCACTAATCGAAGGG
LOC_Os02g33150
OsAffx.12328.1.S1_at--1138--9171Chr02:19709375..19709399 (25 bp)
TGCCGTTCCTGTGCACAAGCAAGTT
LOC_Os02g33150
OsAffx.12328.1.S1_at--390--1491Chr02:19709392..19709416 (25 bp)
AGCAAGTTGGGCACATCACCTGAAA
LOC_Os02g33150
OsAffx.12328.1.S1_at--607--91Chr02:19709731..19709755 (25 bp)
ATTCGATAGCGGGTACCTTTCCAGC
LOC_Os02g33150
OsAffx.12328.1.S1_at--640--8211Chr02:19709770..19709794 (25 bp)
GGCACCTTTCGGTTGTAGACCACAT
LOC_Os02g33150
OsAffx.12328.1.S1_at--580--1711Chr02:19709788..19709812 (25 bp)
ACCACATATTATGGCCGTTGTCACA
LOC_Os02g33150
OsAffx.12328.1.S1_at--719--71Chr02:19709844..19709868 (25 bp)
ATTCCACTTGCAGAACAGCGAGCGC
LOC_Os02g33150
OsAffx.12328.1.S1_at--488--4611Chr02:19709861..19709885 (25 bp)
GCGAGCGCATGGCAAGTATCCTATG
LOC_Os02g33150
OsAffx.12328.1.S1_at--901--6051Chr02:19710566..19710590 (25 bp)
GAGTTGTTTCATTGTCTTCGGTGAC
LOC_Os02g33150
OsAffx.12328.1.S1_at--1101--5331Chr02:19712804..19712828 (25 bp)
GAAGATGGTTTCAAGGCCGTTTCTA
LOC_Os02g33150
Target Sequence 
ATACACACTTCCAGATTCCAATTGCTCATCACTAATCGAAGGGGTCTATCCGTGGGTCATGCTCGCTTGCCATTGCCGTT
CCTGTGCACAAGCAAGTTGGGCACATCACCTGAAAATAGCGACCATAATTCGATAGCGGGTACCTTTCCAGCTCCTGAAC
AATTGGGGCACCTTTCGGTTGTAGACCACATATTATGGCCGTTGTCACATGAAAGTGAAAAACTCTTGCTGTTCAATAGC
ATTCCACTTGCAGAACAGCGAGCGCATGGCAAGTATCCTATGATGCAGAATCAAGTTCAGAGTTGTTTCATTGTCTTCGG
TGACTACATCAGGAAAAAGAAAGGAATTAATAGAGATTACTGGGAAAACAGTATGGTTCGACATTGGGATCGAGGCGGAT
TCGATAAAGGGATCGATTTGAAGAGCAGAGTATGCGTCGGCTGCGAAGGCATCGGCTGGAGTGTGCATTGGTTGAGATGG
ATCGGACAGAGGATAAAAGATACAGCCGATAGAGGTAATGCAATCGATTCCGATGAAGATGGTTTCAAGGCCGTTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12328.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis