Browse Element(s) Details


OsAffx.12330.1.S1_at

Description tigr:9630.m03154
TID=OsAffx.12330.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3322011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33170NANA2+19718014..19718704hypothetical protein
LOC_Os02g33180OsAffx.24554.1.S1_s_at11/112+19721252..19724020Rar1, putative, expressed
LOC_Os02g33180Os.4686.1.S1_at11/112+19721252..19724020Rar1, putative, expressed
LOC_Os02g33180OsAffx.24554.1.S1_at8/112+19721252..19724020Rar1, putative, expressed
LOC_Os02g33190NANA2+19728096..19729943retrotransposon protein, putative, unclassified
LOC_Os02g33200OsAffx.21171.4.S1_x_at3/112+19734633..19736120retrotransposon protein, putative, unclassified
LOC_Os02g33200OsAffx.21171.4.S1_at2/112+19734633..19736120retrotransposon protein, putative, unclassified
LOC_Os02g33210NANA2+19736765..19738739retrotransposon protein, putative, unclassified
LOC_Os02g33220OsAffx.12330.1.S1_at11/112+19743026..19743475hypothetical protein
LOC_Os02g33230Os.15046.1.S1_at11/112+19744245..19749130expressed protein
LOC_Os02g33240OsAffx.12331.1.S1_at11/112+19752459..19753496F-box domain containing protein, expressed
LOC_Os02g33250NANA2+19759364..19759774hypothetical protein
LOC_Os02g33260NANA2+19761712..19764578retrotransposon protein, putative, unclassified
LOC_Os02g33270OsAffx.940.1.S1_x_at1/112+19765434..19767521retrotransposon protein, putative, unclassified
LOC_Os02g33270OsAffx.22896.1.S1_x_at1/112+19765434..19767521retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12330.1.S1_at--393--1991Chr02:19743395..19743419 (25 bp)
ACTCCACCAGCAAGCTGCAAGCAGG
LOC_Os02g33220
OsAffx.12330.1.S1_at--11--8991Chr02:19743368..19743392 (25 bp)
TGAACCGAGGGCGTCGTTGATGTCT
LOC_Os02g33220
OsAffx.12330.1.S1_at--1007--1071Chr02:19743361..19743385 (25 bp)
AGGGCGTCGTTGATGTCTGGTCCAC
LOC_Os02g33220
OsAffx.12330.1.S1_at--668--4651Chr02:19743358..19743382 (25 bp)
GCGTCGTTGATGTCTGGTCCACAGT
LOC_Os02g33220
OsAffx.12330.1.S1_at--1141--10771Chr02:19743352..19743376 (25 bp)
TTGATGTCTGGTCCACAGTCTGCCA
LOC_Os02g33220
OsAffx.12330.1.S1_at--289--771Chr02:19743349..19743373 (25 bp)
ATGTCTGGTCCACAGTCTGCCACGG
LOC_Os02g33220
OsAffx.12330.1.S1_at--337--9491Chr02:19743334..19743358 (25 bp)
TCTGCCACGGCAGTCATCGTCATTG
LOC_Os02g33220
OsAffx.12330.1.S1_at--759--9191Chr02:19743332..19743356 (25 bp)
TGCCACGGCAGTCATCGTCATTGCC
LOC_Os02g33220
OsAffx.12330.1.S1_at--221--4411Chr02:19743302..19743326 (25 bp)
GCCACGGTCACGCATGAGCCGTTGC
LOC_Os02g33220
OsAffx.12330.1.S1_at--568--3791Chr02:19743246..19743270 (25 bp)
CTCCCACTTGGCACGCGCGGGAAGA
LOC_Os02g33220
OsAffx.12330.1.S1_at--799--7214Chr08:2563802..2563845 (25 bp)
GTCGAGGATGGATCGATGGGCCGAT
NONE
Target Sequence 
ACTCCACCAGCAAGCTGCAAGCAGGGGTGAACCGAGGGCGTCGTTGATGTCTGGTCCACAGTCTGCCACGGCAGTCATCG
TCATTGCCGCCGCGCCACGGTCACGCATGAGCCGTTGCCGCCGCAGGGAGCCGTCACCGCCGCCACTGCCTCCCACTTGG
CACGCGCGGGAAGACGTCGCCGCCGCCGCCACCTGGGAGCCGTCGCCGCCACGAGGCGGTCGAGGATGGATCGATGGGCC
GAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12330.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis