Browse Element(s) Details


OsAffx.12337.1.S1_at

Description tigr:9630.m03201
TID=OsAffx.12337.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3370010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33680NANA2+20076291..20077808U-box domain containing protein, expressed
LOC_Os02g33690OsAffx.24558.1.S1_at11/112+20084348..20084722hypothetical protein
LOC_Os02g33700OsAffx.12337.1.S1_at10/112+20096900..20098594hypothetical protein
LOC_Os02g33700Os.55134.1.S1_at3/112+20096900..20098594hypothetical protein
LOC_Os02g33700Os.55296.1.S1_x_at2/112+20096900..20098594hypothetical protein
LOC_Os02g33710Os.18672.1.S1_s_at6/112+20103243..20106357Histidine decarboxylase, putative, expressed
LOC_Os02g33720OsAffx.24559.1.S1_x_at11/112+20112353..20112961Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g33730OsAffx.24560.1.S1_s_at10/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.28660.1.S1_at3/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.12861.4.S1_at2/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.28660.1.S1_x_at1/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.12861.4.S1_x_at1/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12337.1.S1_at--529--4671NONE
GCGGACTTGAAACACCAGGAATCGA
NONE
OsAffx.12337.1.S1_at--448--5311Chr02:20098409..20098433 (25 bp)
GAAGGTGCCAGAGGGCATCACTGCC
LOC_Os02g33700
OsAffx.12337.1.S1_at--984--1331Chr02:20098418..20098442 (25 bp)
AGAGGGCATCACTGCCACGCGCATG
LOC_Os02g33700
OsAffx.12337.1.S1_at--529--4811Chr02:20098446..20098470 (25 bp)
GCTCGGTTCTCTGGCAGTCGAAAGA
LOC_Os02g33700
OsAffx.12337.1.S1_at--463--1132Chr10:21362167..21362450 (25 bp)
AGTCGAAAGACTGTGGTTATCCAAG
NONE
OsAffx.12337.1.S1_at--738--5731Chr02:20098469..20098493 (25 bp)
GACTGTGGTTATCCAAGACCATCCA
LOC_Os02g33700
OsAffx.12337.1.S1_at--1048--5831Chr02:20098485..20098509 (25 bp)
GACCATCCACATCAAGCCGTCAGAA
LOC_Os02g33700
OsAffx.12337.1.S1_at--267--2671Chr02:20098498..20098522 (25 bp)
AAGCCGTCAGAAATACGACTTAGTC
LOC_Os02g33700
OsAffx.12337.1.S1_at--637--3091Chr02:20098509..20098533 (25 bp)
AATACGACTTAGTCATGTCGCTGCT
LOC_Os02g33700
OsAffx.12337.1.S1_at--664--771Chr02:20098523..20098547 (25 bp)
ATGTCGCTGCTTGAATCAATGCCCA
LOC_Os02g33700
OsAffx.12337.1.S1_at--99--5251Chr02:20098535..20098559 (25 bp)
GAATCAATGCCCACTAACGACAATT
LOC_Os02g33700
Target Sequence 
GCGGACTTGAAACACCAGGAATCGAAGGTGCCAGAGGGCATCACTGCCACGCGCATGCCGGCTCGGTTCTCTGGCAGTCG
AAAGACTGTGGTTATCCAAGACCATCCACATCAAGCCGTCAGAAATACGACTTAGTCATGTCGCTGCTTGAATCAATGCC
CACTAACGACAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12337.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis