Browse Element(s) Details


OsAffx.12439.1.S1_at

Description tigr:9630.m03963
TID=OsAffx.12439.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4150011/11Calcium binding EGF domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g41470Os.6575.1.S1_at11/112+24842306..24854226Lysyl-tRNA synthetase, putative, expressed
LOC_Os02g41470Os.6575.1.S1_s_at11/112+24842306..24854226Lysyl-tRNA synthetase, putative, expressed
LOC_Os02g41470Os.22603.1.A1_a_at11/112+24842306..24854226Lysyl-tRNA synthetase, putative, expressed
LOC_Os02g41470OsAffx.25238.1.S1_at1/112+24842306..24854226Lysyl-tRNA synthetase, putative, expressed
LOC_Os02g41480Os.49789.1.S1_at11/112+24856334..24858930Protein kinase domain containing protein, expressed
LOC_Os02g41490OsAffx.24668.1.S1_at11/112+24860902..24861906hypothetical protein
LOC_Os02g41500OsAffx.12439.1.S1_at11/112+24865877..24868342Calcium binding EGF domain containing protein, expressed
LOC_Os02g41500OsAffx.21755.1.S1_x_at1/112+24865877..24868342Calcium binding EGF domain containing protein, expressed
LOC_Os02g41510Os.10172.1.S1_at11/112+24872907..24874063Myb-related protein Myb4, putative, expressed
LOC_Os02g41510OsAffx.7575.1.S1_x_at1/112+24872907..24874063Myb-related protein Myb4, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12439.1.S1_at--837--1831Chr02:24866389..24866413 (25 bp)
ACGCTGGCTCCGACAGATGAAGCTC
LOC_Os02g41500
OsAffx.12439.1.S1_at--243--5411Chr02:24866371..24866395 (25 bp)
GAAGCTCAGTTCGTCACACTTGTTC
LOC_Os02g41500
OsAffx.12439.1.S1_at--740--5831Chr02:24866342..24866366 (25 bp)
GACCTGCGGTTACCTCGATCCAGAG
LOC_Os02g41500
OsAffx.12439.1.S1_at--519--7211Chr02:24866266..24866290 (25 bp)
GTCGTTCTACTAGAGCTGCTCACGT
LOC_Os02g41500
OsAffx.12439.1.S1_at--363--4771Chr02:24866252..24866276 (25 bp)
GCTGCTCACGTGTCGAAAGGCACTG
LOC_Os02g41500
OsAffx.12439.1.S1_at--596--1951Chr02:24866231..24866255 (25 bp)
ACTGAACCTTCAGGCCCTCGAGGAG
LOC_Os02g41500
OsAffx.12439.1.S1_at--758--1451Chr02:24866205..24866229 (25 bp)
AGAAGAATCTCTCGTCACATTTCCT
LOC_Os02g41500
OsAffx.12439.1.S1_at--833--7091Chr02:24866192..24866216 (25 bp)
GTCACATTTCCTTCTAGCTCTAAGT
LOC_Os02g41500
OsAffx.12439.1.S1_at--957--1451Chr02:24866058..24866082 (25 bp)
AGAAGAGACCCTCGATGCGTCAGGT
LOC_Os02g41500
OsAffx.12439.1.S1_at--586--10431Chr02:24865950..24865974 (25 bp)
TTAGAGGATCGCCAAGCACGTTCTC
LOC_Os02g41500
OsAffx.12439.1.S1_at--141--10011Chr02:24865913..24865937 (25 bp)
TAGCAATGGGTATGTCAGCTTGACT
LOC_Os02g41500
Target Sequence 
ACGCTGGCTCCGACAGATGAAGCTCAGTTCGTCACACTTGTTCAGGGGACCTGCGGTTACCTCGATCCAGAGTACATGCA
GACATGCAAACTGACGGATAAGAGTGATGTGTACAGCTTCGGCGTCGTTCTACTAGAGCTGCTCACGTGTCGAAAGGCAC
TGAACCTTCAGGCCCTCGAGGAGGAGAAGAATCTCTCGTCACATTTCCTTCTAGCTCTAAGTGAGAACAGGCTCGAGGGG
ATACTGGACTCACAGATACAAAGCGAACAGAGCATTGAACTGATTGAACAAATGGCAGATCTAGCGAAGCAGTGCCTGGA
TATGTCCAGTGAGAAGAGACCCTCGATGCGTCAGGTTGCAGAGGAGCTTGACAGGCTAAGGAAGCTAGCAGAGCATCCTT
GGGGACGGCATGAAAGTGAGGAGCTGGAGAAATTGCTTGTTAGAGGATCGCCAAGCACGTTCTCTGAAATAGAACTTAGC
AATGGGTATGTCAGCTTGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12439.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis