Browse Element(s) Details


OsAffx.12453.2.S1_x_at

Description tigr:9630.m04053
TID=OsAffx.12453.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2795011/11hypothetical protein
LOC_Os02g4234011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27900Os.53142.1.S1_at3/118+16872318..16877980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27900OsAffx.27522.1.S1_x_at2/118+16872318..16877980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27900OsAffx.16187.1.S1_at1/118+16872318..16877980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27900OsAffx.3613.1.S1_x_at1/118+16872318..16877980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27910NANA8+16881750..16883183retrotransposon protein, putative, unclassified
LOC_Os08g27920NANA8+16887733..16889801retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27930NANA8+16892067..16893774retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27940OsAffx.31069.1.S1_x_at1/118+16893982..16897012retrotransposon protein, putative, unclassified
LOC_Os08g27940OsAffx.31069.2.S1_x_at1/118+16893982..16897012retrotransposon protein, putative, unclassified
LOC_Os08g27950OsAffx.12453.2.S1_x_at11/118+16900723..16902537hypothetical protein
LOC_Os08g27950OsAffx.8934.1.S1_x_at1/118+16900723..16902537hypothetical protein
LOC_Os08g27960OsAffx.28472.1.S1_x_at10/118+16903431..16904154hypothetical protein
LOC_Os08g27960OsAffx.31730.1.S1_x_at2/118+16903431..16904154hypothetical protein
LOC_Os08g27970NANA8+16904481..16906945hypothetical protein
LOC_Os08g27980Os.40360.1.S1_at9/118+16914881..16921210transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27980Os.40360.1.S1_x_at7/118+16914881..16921210transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27980OsAffx.15821.2.S1_at4/118+16914881..16921210transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27980Os.40855.5.S1_x_at3/118+16914881..16921210transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27980OsAffx.22548.1.S1_at1/118+16914881..16921210transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27990OsAffx.20490.1.S1_at5/118+16923520..16924946transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27990Os.2358.1.S1_at4/118+16923520..16924946transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28000NANA8+16927378..16927958hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12453.2.S1_x_at--632--874Chr08:16900791..16900848 (25 bp)
AGGAGGACAACAGGTCAACGACGGC
LOC_Os08g27950
OsAffx.12453.2.S1_x_at--906--8477Chr10:16796444..16796945 (25 bp)
TGGCGGCGGTTCATGTGCTAAATGT
NONE
OsAffx.12453.2.S1_x_at--1156--3956Chr08:19101953..19101976 (24 bp)
CGGTTCATGTGCTAAATGTGGGCAA
NONE
OsAffx.12453.2.S1_x_at--359--7898Chr10:16796928..16796953 (25 bp)
GGTTCATGTGCTAAATGTGGGCAAA
NONE
OsAffx.12453.2.S1_x_at--316--6737Chr10:16796929..16796954 (25 bp)
GTTCATGTGCTAAATGTGGGCAAAT
NONE
OsAffx.12453.2.S1_x_at--591--9618Chr10:16796931..16796956 (25 bp)
TCATGTGCTAAATGTGGGCAAATTC
NONE
OsAffx.12453.2.S1_x_at--988--3457Chr10:16796932..16796957 (25 bp)
CATGTGCTAAATGTGGGCAAATTCT
NONE
OsAffx.12453.2.S1_x_at--46--777Chr10:16796933..16796958 (25 bp)
ATGTGCTAAATGTGGGCAAATTCTC
NONE
OsAffx.12453.2.S1_x_at--579--8696Chr10:16796934..16796959 (25 bp)
TGTGCTAAATGTGGGCAAATTCTCA
NONE
OsAffx.12453.2.S1_x_at--540--3737Chr10:16796938..16796963 (25 bp)
CTAAATGTGGGCAAATTCTCAATCA
NONE
OsAffx.12453.2.S1_x_at--68--9857Chr10:16796939..16796964 (25 bp)
TAAATGTGGGCAAATTCTCAATCAT
NONE
Target Sequence 
AGGAGGACAACAGGTCAACGACGGCGGTGGTGGCTCGATGAAAGGAGGAGGCGACAGTGGCAGCTTAGCGCGGGGAGGTG
ATGGTGGCGGCTCGACGTGGGGAGGAGGTGGCGGCGGCTCGGTGGGAAGAGGAGGCAACAACGGTGGCGGCGGTTCATGT
GCTAAATGTGGGCAAATTCTCAATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12453.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis