Browse Element(s) Details


OsAffx.12459.1.S1_at

Description tigr:9630.m04087
TID=OsAffx.12459.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=beta-expansin 3 precursor (at-expb3) (ath-expbeta-1.6).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4265010/11Beta-expansin 3 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42600Os.6548.1.S1_at11/112+25620879..25630184C-terminal domain phosphatase-like 1, putative, expressed
LOC_Os02g42610OsAffx.12458.1.S1_at11/112+25632333..25632759hypothetical protein
LOC_Os02g42620Os.17824.1.S1_at11/112+25633218..25635264protein kinase family protein, putative, expressed
LOC_Os02g42620Os.17824.1.S1_x_at11/112+25633218..25635264protein kinase family protein, putative, expressed
LOC_Os02g42630OsAffx.2944.1.S1_at11/112+25638667..25639105hypothetical protein
LOC_Os02g42640Os.54055.1.S1_at7/112+25640848..25642222expressed protein
LOC_Os02g42650OsAffx.12459.1.S1_at10/112+25646463..25653115Beta-expansin 3 precursor, putative, expressed
LOC_Os02g42660Os.23411.1.S1_at11/112+25654427..25658462Fatty acid desaturase family protein, expressed
LOC_Os02g42670Os.10646.1.S1_at11/112+25659145..25665764expressed protein
LOC_Os02g42690Os.49563.2.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.1.S1_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.3.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.51441.1.S1_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42690Os.49563.4.S1_x_at11/112+25665683..25671356Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g42700Os.37995.1.S1_at10/112+25673843..25677732thioredoxin family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12459.1.S1_at--339--9851Chr02:25648235..25648259 (25 bp)
TACAAGGTGCGTTGCCTCGACGCCA
LOC_Os02g42650
OsAffx.12459.1.S1_at--902--4351Chr02:25648393..25648417 (25 bp)
CCAGCTGCAGAACCGAGGCGAGATC
LOC_Os02g42650
OsAffx.12459.1.S1_at--636--1271Chr02:25648413..25648435 (23 bp)
AGATCTCGGTGGTGTACCGCAGGAC
LOC_Os02g42650
OsAffx.12459.1.S1_at--891--5371Chr02:25649167..25649191 (25 bp)
GAAGAACATTGCCTTCCACGTGAAC
LOC_Os02g42650
OsAffx.12459.1.S1_at--171--4451Chr02:25649177..25649201 (25 bp)
GCCTTCCACGTGAACGAGGGCTCGA
LOC_Os02g42650
OsAffx.12459.1.S1_at--187--9511Chr02:25649214..25649238 (25 bp)
TCTCGCTTCTCGTCGAATTCGAGGA
LOC_Os02g42650
OsAffx.12459.1.S1_at--746--7971Chr12:24753084..24753109 (24 bp)
GGATCCATGCAGCTAAAACAGGCAA
NONE
OsAffx.12459.1.S1_at--253--2391Chr02:25652923..25652947 (25 bp)
AAACTCGGCACAATGGCAGGACATG
LOC_Os02g42650
OsAffx.12459.1.S1_at--76--8511Chr02:25652936..25652960 (25 bp)
TGGCAGGACATGAAGCACATCTGGG
LOC_Os02g42650
OsAffx.12459.1.S1_at--442--10591Chr02:25653002..25653026 (25 bp)
TTCTCGGTGAGGCTGACAACCCTGA
LOC_Os02g42650
OsAffx.12459.1.S1_at--770--7991Chr02:25653052..25653076 (25 bp)
GGATGTCATCCCCAAGAACTGGACC
LOC_Os02g42650
Target Sequence 
TACAAGGTGCGTTGCCTCGACGCCAGCATCTGCTCGCGCCGCGCCGTCACGGTCATCGTCACCGACGAGTGCCCCGGCGG
CGTCTGCGCCTTCGGCCGCACGCACTTCGACCTCAGCGGCGCCGCCTTCGCCAGGCTCGCCGTCGCCGGCCACGGCGGCC
AGCTGCAGAACCGAGGCGAGATCTCGGTGGTGTACCGCAGGACGGCGTGCAAGTACGGGGGGAAGAACATTGCCTTCCAC
GTGAACGAGGGCTCGACGACCTTCTGGCTCTCGCTTCTCGTCGAATTCGAGGATGGAGACGGCGACATTGGATCCATGCA
GCTAAAACAGGCAAACTCGGCACAATGGCAGGACATGAAGCACATCTGGGGGGCCACCTGGAGCCTCACCCCGGGCCCAC
TGGTGGGGCCCTTCTCGGTGAGGCTGACAACCCTGACCACCAGGCAGACCCTCTCGGCCCAGGATGTCATCCCCAAGAAC
TGGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12459.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis