Browse Element(s) Details


OsAffx.12542.1.S1_at

Description tigr:9630.m04667
TID=OsAffx.12542.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4792011/11exonuclease family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47890Os.54767.1.S1_at11/112+29288705..29293635expressed protein
LOC_Os02g47900OsAffx.24772.1.S1_x_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47900Os.47321.1.S1_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47900OsAffx.24772.1.S1_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47910OsAffx.24773.1.S1_at9/112+29304483..29305300hypothetical protein
LOC_Os02g47920OsAffx.12542.1.S1_at11/112+29312762..29314803exonuclease family protein
LOC_Os02g47930Os.47881.1.S1_at11/112+29314620..29317124expressed protein
LOC_Os02g47940Os.16087.1.S1_at10/112+29318842..29322503Histidinol-phosphate aminotransferase, chloroplast precursor, putative, expressed
LOC_Os02g47950Os.56149.1.S1_at10/112+29324661..29325470expressed protein
LOC_Os02g47960OsAffx.12543.1.S1_at10/112+29331066..29332463hypothetical protein
LOC_Os02g47970Os.11709.1.S1_at11/112+29335385..29352022calpain, putative, expressed
LOC_Os02g47970Os.11709.1.S2_at11/112+29335385..29352022calpain, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0004527molecular_functionexonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12542.1.S1_at--683--7131Chr02:29313796..29313820 (25 bp)
GTCATCTTCCAGACCTATGTGAAAC
LOC_Os02g47920
OsAffx.12542.1.S1_at--448--7631Chr02:29314133..29314157 (25 bp)
GGGACGCAATGCCACTGAAGCTTGT
LOC_Os02g47920
OsAffx.12542.1.S1_at--1003--8111Chr02:29314173..29314197 (25 bp)
GGACATCCTGTGCAACGGTGAGCCA
LOC_Os02g47920
OsAffx.12542.1.S1_at--939--8451Chr02:29314245..29314269 (25 bp)
TGGCCATGGCCTGGAGCATGAACTT
LOC_Os02g47920
OsAffx.12542.1.S1_at--225--4971Chr02:29314260..29314284 (25 bp)
GCATGAACTTGAGCGCCTGGGACTG
LOC_Os02g47920
OsAffx.12542.1.S1_at--724--8031Chr02:29314284..29314308 (25 bp)
GGAGTACCCGGCATTCATGATCAGG
LOC_Os02g47920
OsAffx.12542.1.S1_at--846--9011Chr02:29314404..29314428 (25 bp)
TGCAAAGTACCCACCACTGATGAAA
LOC_Os02g47920
OsAffx.12542.1.S1_at--1100--8891Chr02:29314439..29314463 (25 bp)
TGAGCAACTCCCTAAAGTACCTTAC
LOC_Os02g47920
OsAffx.12542.1.S1_at--924--6971Chr02:29314455..29314479 (25 bp)
GTACCTTACACAGGCATATCTTGGG
LOC_Os02g47920
OsAffx.12542.1.S1_at--626--10851Chr02:29314574..29314595 (22 bp)
TTGGGTATGATATCCACACTGGCAT
LOC_Os02g47920
OsAffx.12542.1.S1_at--563--2171Chr02:29314586..29314610 (25 bp)
ACACTGGCATTCAGGATCCCTATGA
LOC_Os02g47920
Target Sequence 
GTCATCTTCCAGACCTATGTGAAACCCACCACGACCGTCACAAACTACAGGTATGAAATGACTGGGATAAGGCCGGAGTA
CTTGAGGGACGCAATGCCACTGAAGCTTGTGCAGAGGAGGATCCAGGACATCCTGTGCAACGGTGAGCCACTATGGAAGA
TACGGCCAAGGAGCTCTGGGAGGGCAAGGATCCTCGTTGGCCATGGCCTGGAGCATGAACTTGAGCGCCTGGGACTGGAG
TACCCGGCATTCATGATCAGGGATACTGCAAAGTACCCACCACTGATGAAAACTAGCAAGCTGAGCAACTCCCTAAAGTA
CCTTACACAGGCATATCTTGGGTATGATATCCACACTGGCATTCAGGATCCCTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12542.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis