Browse Element(s) Details


OsAffx.12548.1.S1_at

Description tigr:9630.m04706
TID=OsAffx.12548.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4828011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48220Os.50530.1.S1_at9/112+29517485..29522082expressed protein
LOC_Os02g48220OsAffx.24779.1.S1_at1/112+29517485..29522082expressed protein
LOC_Os02g48230Os.47130.4.A1_x_at3/112+29525150..29525473retrotransposon protein, putative, unclassified
LOC_Os02g48240NANA2+29527381..29529282retrotransposon protein, putative, unclassified
LOC_Os02g48250NANA2+29530429..29533851retrotransposon protein, putative, unclassified
LOC_Os02g48260OsAffx.26414.1.S1_at1/112+29535247..29538443retrotransposon protein, putative, unclassified
LOC_Os02g48270OsAffx.2997.1.S1_at11/112+29538831..29539591LOB domain protein 3, putative
LOC_Os02g48280OsAffx.12548.1.S1_at11/112+29542503..29542955expressed protein
LOC_Os02g48290Os.9374.1.S1_at11/112+29545079..29548378Thioredoxin reductase 1, putative, expressed
LOC_Os02g48300OsAffx.24780.1.S1_at11/112+29549773..29551847F-box domain containing protein
LOC_Os02g48310NANA2+29556250..29559068hAT family dimerisation domain containing protein
LOC_Os02g48320OsAffx.24782.1.S1_at11/112+29565978..29567500DNA-binding protein, putative, expressed
LOC_Os02g48320OsAffx.24782.1.S1_s_at11/112+29565978..29567500DNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12548.1.S1_at--711--8331Chr02:29542588..29542612 (25 bp)
GGCTGTGCCCGAGGAACCGGTTCTC
LOC_Os02g48280
OsAffx.12548.1.S1_at--785--8151Chr02:29542600..29542624 (25 bp)
GGAACCGGTTCTCGGTGCGGCGGCT
LOC_Os02g48280
OsAffx.12548.1.S1_at--606--8331Chr02:29542621..29542645 (25 bp)
GGCTGCGGGCCAAGCTGCTCACGTT
LOC_Os02g48280
OsAffx.12548.1.S1_at--84--7551Chr02:29542627..29542651 (25 bp)
GGGCCAAGCTGCTCACGTTCCTCGG
LOC_Os02g48280
OsAffx.12548.1.S1_at--528--9411Chr02:29542654..29542678 (25 bp)
TCGTCGGCCGGTACGTGCGCCAGCT
LOC_Os02g48280
OsAffx.12548.1.S1_at--921--4711Chr02:29542725..29542749 (25 bp)
GCTGGAGGCGGCTGCTCACGGAGCA
LOC_Os02g48280
OsAffx.12548.1.S1_at--550--2131Chr02:29542806..29542830 (25 bp)
ACAGTGCCGCCGTCGTTCATGCGGT
LOC_Os02g48280
OsAffx.12548.1.S1_at--630--1991Chr02:29542834..29542858 (25 bp)
ACTCGTTCTACGCGCAGGCGATCGC
LOC_Os02g48280
OsAffx.12548.1.S1_at--231--6751Chr02:29542871..29542895 (25 bp)
GTTCATCAAGCGGAACTCAGTCCCG
LOC_Os02g48280
OsAffx.12548.1.S1_at--461--1631Chr02:29542879..29542903 (25 bp)
AGCGGAACTCAGTCCCGGTCGAGGA
LOC_Os02g48280
OsAffx.12548.1.S1_at--644--3371Chr02:29542888..29542912 (25 bp)
CAGTCCCGGTCGAGGACTACGCCAG
LOC_Os02g48280
Target Sequence 
GGCTGTGCCCGAGGAACCGGTTCTCGGTGCGGCGGCTGCGGGCCAAGCTGCTCACGTTCCTCGGCCTCGTCGGCCGGTAC
GTGCGCCAGCTGCTGGCGGTGAGGCGGCCGCGGTCGTCGTCGTCGTCTTCGTCGTCGGCTGGAGGCGGCTGCTCACGGAG
CAGCAGCACGAGGTTCCTCGTCGGCGGCGGGAAGCATCACGTCGACGGCGGGCGGCGGACAGTGCCGCCGTCGTTCATGC
GGTCCAACTCGTTCTACGCGCAGGCGATCGCCGACTGCCTCGAGTTCATCAAGCGGAACTCAGTCCCGGTCGAGGACTAC
GCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12548.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis