Browse Element(s) Details


OsAffx.12549.1.S1_at

Description tigr:9630.m04723
TID=OsAffx.12549.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4843011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48400Os.27633.1.A1_at7/112+29629988..29633482expressed protein
LOC_Os02g48410Os.28943.1.S1_x_at3/112+29639398..29642638retrotransposon protein, putative, unclassified
LOC_Os02g48420NANA2+29643259..29648155retrotransposon protein, putative, unclassified
LOC_Os02g48430OsAffx.12549.1.S1_at11/112+29651473..29654045expressed protein
LOC_Os02g48430Os.6760.2.S1_at1/112+29651473..29654045expressed protein
LOC_Os02g48440OsAffx.14106.1.S1_at11/112+29658295..29658594hypothetical protein
LOC_Os02g48450Os.47737.1.S1_at11/112+29661874..29663793Caricain precursor, putative, expressed
LOC_Os02g48460Os.7122.1.S1_at11/112+29664832..29669151NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g48470Os.12751.1.S1_at11/112+29670153..29671174expressed protein
LOC_Os02g48480Os.38507.1.S1_at9/112+29671967..29672681expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12549.1.S1_at--899--8911Chr02:29653460..29653484 (25 bp)
TGAGCTCCTGTCAGGCCAAGTCAAA
LOC_Os02g48430
OsAffx.12549.1.S1_at--1123--871Chr02:29653472..29653496 (25 bp)
AGGCCAAGTCAAAGCTGTCCGGAAG
LOC_Os02g48430
OsAffx.12549.1.S1_at--971--3271Chr02:29653481..29653505 (25 bp)
CAAAGCTGTCCGGAAGCCTTGGAGA
LOC_Os02g48430
OsAffx.12549.1.S1_at--917--6131Chr02:29653525..29653549 (25 bp)
GAGGTACATCCTTTGGACTTGATGA
LOC_Os02g48430
OsAffx.12549.1.S1_at--189--7771Chr02:29653659..29653683 (25 bp)
GGTGCAGCAGTAGCAGACGTCGTCC
LOC_Os02g48430
OsAffx.12549.1.S1_at--843--6951Chr02:29653668..29653692 (25 bp)
GTAGCAGACGTCGTCCTCGAAGACA
LOC_Os02g48430
OsAffx.12549.1.S1_at--221--9331Chr02:29653699..29653723 (25 bp)
TCGCCACCGGAGTAGTTGATGCTGC
LOC_Os02g48430
OsAffx.12549.1.S1_at--621--1192Chr02:29653709..29653733 (25 bp)
AGTAGTTGATGCTGCTCGCGTTGCA
LOC_Os02g48430
OsAffx.12549.1.S1_at--257--912Chr02:29653781..29653805 (25 bp)
AGGCGTAGAAGAGGAGTCCCTCGCC
LOC_Os02g48430
OsAffx.12549.1.S1_at--424--4131Chr02:29653805..29653829 (25 bp)
CGCAGGACGCCATGACGCCATGCGG
LOC_Os02g48430
OsAffx.12549.1.S1_at--758--9132Chr02:29653825..29653849 (25 bp)
TGCGGCGACCAGTCCCAGGCCAGGT
LOC_Os02g48430
Target Sequence 
TGAGCTCCTGTCAGGCCAAGTCAAAGCTGTCCGGAAGCCTTGGAGAAGTCGATGTCGTCGCCGAAGAGGTACATCCTTTG
GACTTGATGAGAAGGAAGAGCTCGTCGCCTGCCACCGCGATGCGCGCCTCGGCGGGGAGCTCGACGGCGGGCACCGGGAT
GACGGCGGCGATGGGGAGGGTGAGGGCGTCGACGATGGTGGTGCAGCAGTAGCAGACGTCGTCCTCGAAGACAAAGAACT
CGCCACCGGAGTAGTTGATGCTGCTCGCGTTGCAGTCGGCCATGGCGGCGATAGGGGCCCAGGCGGCGGCGGGCGGGTCG
GAGGCGTAGAAGAGGAGTCCCTCGCCGCAGGACGCCATGACGCCATGCGGCGACCAGTCCCAGGCCAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12549.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis