Browse Element(s) Details


OsAffx.12599.1.S1_s_at

Description tigr:9630.m05089
TID=OsAffx.12599.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5174011/11VQ motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51689NANA2+31662925..31663303NA
LOC_Os02g51700Os.10260.1.S1_at11/112+31667275..31669420expressed protein
LOC_Os02g51710Os.8165.1.S1_at11/112+31670605..31671686wound/stress protein, putative, expressed
LOC_Os02g51720OsAffx.12598.1.S1_at11/112+31677677..31678615hypothetical protein
LOC_Os02g51730Os.18041.1.S1_at11/112+31680311..31684415TPR Domain containing protein, expressed
LOC_Os02g51740Os.51369.1.S1_at11/112+31688258..31691509VQ motif family protein, expressed
LOC_Os02g51740OsAffx.12599.1.S1_s_at11/112+31688258..31691509VQ motif family protein, expressed
LOC_Os02g51750Os.11915.1.S1_at11/112+31692292..31694577Annexin-like protein RJ4, putative, expressed
LOC_Os02g51760OsAffx.12600.1.S1_at11/112+31698319..31701523expressed protein
LOC_Os02g51770Os.20783.1.S1_a_at11/112+31701789..31705122TLD family protein, expressed
LOC_Os02g51780Os.9483.1.S1_at11/112+31705484..31710525RNB-like protein, expressed
LOC_Os02g51790Os.5206.1.S2_at11/112+31713856..3171663050S ribosomal protein L29, chloroplast precursor, putative, expressed
LOC_Os02g51790Os.5206.1.S1_at10/112+31713856..3171663050S ribosomal protein L29, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12599.1.S1_s_at--1013--2031Chr02:31690710..31690734 (25 bp)
ACTATTGAGCCTCTGTCACGAGAAG
LOC_Os02g51740
OsAffx.12599.1.S1_s_at--323--5871Chr02:31690716..31690740 (25 bp)
GAGCCTCTGTCACGAGAAGCCAATG
LOC_Os02g51740
OsAffx.12599.1.S1_s_at--225--1451Chr02:31690730..31690754 (25 bp)
AGAAGCCAATGTACTCGTGCGACCA
LOC_Os02g51740
OsAffx.12599.1.S1_s_at--844--751Chr02:31690738..31690762 (25 bp)
ATGTACTCGTGCGACCACGAATGCA
LOC_Os02g51740
OsAffx.12599.1.S1_s_at--373--9151Chr02:31690747..31690771 (25 bp)
TGCGACCACGAATGCACGGCGCCAA
LOC_Os02g51740
OsAffx.12599.1.S1_s_at--693--2831Chr02:31690792..31690816 (25 bp)
AAGTACCAGCCGTGCATCGGTGTCT
LOC_Os02g51740
OsAffx.12599.1.S1_s_at--1150--8451Chr02:31690994..31691018 (25 bp)
TGGCGACCGACGTGTCCAGCTTCCG
LOC_Os02g51740
OsAffx.12599.1.S1_s_at--801--1551Chr02:31691011..31691035 (25 bp)
AGCTTCCGCTCCATGGTGCAGGAGC
LOC_Os02g51740
OsAffx.12599.1.S1_s_at--551--6931Chr02:31691078..31691102 (25 bp)
GTAGGATCCCCGTCCACGCGGTCAA
LOC_Os02g51740
OsAffx.12599.1.S1_s_at--1036--3191Chr02:31691149..31691173 (25 bp)
CACGGTTCGGACACGGCGACTGCTG
LOC_Os02g51740
OsAffx.12599.1.S1_s_at--873--7151Chr02:31691203..31691227 (25 bp)
GTCTCGACCGTGCAGCTGATGCAGT
LOC_Os02g51740
Target Sequence 
ACTATTGAGCCTCTGTCACGAGAAGCCAATGTACTCGTGCGACCACGAATGCACGGCGCCAACGCACACCGCGTTCGGCG
CCAAGTACCAGCCGTGCATCGGTGTCTCGGGGCGCCCTGACCATCACGCCGTCGGGAGGCTGCAGCAGCCGGCTGGCAAG
GCCGCCGCCGCCGCCGTCGTTTCCGCGGCCGCGCAGCCTCAGCGCGCCGCCAAGAAGAGGCATGCGGCGGCGCCGCCGCC
GCGCCCGTCGGCGTCGACGTCGCGCCGCTCGTCGACCACCGTGGTGGCGACCGACGTGTCCAGCTTCCGCTCCATGGTGC
AGGAGCTCACCGGCTTCCCGGCGGCCGCCATCTTCCGGCCGCTGCCTCGTAGGATCCCCGTCCACGCGGTCAACCCGTCG
CCCGCGGTGCGTGGGTACGGTGGTGGCGCGCTTCAGGGGCACGGTTCGGACACGGCGACTGCTGCCGGCAGCAGCAGCAG
CAGCAACCCGGGCGTCTCGACCGTGCAGCTGATGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12599.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis