Browse Element(s) Details


OsAffx.12602.1.S1_at

Description tigr:9630.m05101
TID=OsAffx.12602.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=methyltransferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5186010/11dehydration-responsive protein, putative, expressed
LOC_Os12g053941/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51810Os.52928.1.S1_at11/112+31733624..31741499chloroplast outer membrane translocon subunit, putative, expressed
LOC_Os02g51820Os.30724.2.S1_at11/112+31741843..31743657expressed protein
LOC_Os02g51830Os.30724.1.S1_at11/112+31743490..31748587histidyl-tRNA synthetase family protein, expressed
LOC_Os02g51840OsAffx.24829.1.S1_at11/112+31748793..31752491expressed protein
LOC_Os02g51840Os.17938.1.A1_s_at11/112+31748793..31752491expressed protein
LOC_Os02g51840Os.17938.1.A1_at6/112+31748793..31752491expressed protein
LOC_Os02g51850Os.22612.1.A1_at11/112+31753149..31755693adenosine 5'-phosphosulfate reductase 3, putative, expressed
LOC_Os02g51860Os.24364.1.A1_s_at11/112+31757510..31762862dehydration-responsive protein, putative, expressed
LOC_Os02g51860OsAffx.12602.1.S1_at10/112+31757510..31762862dehydration-responsive protein, putative, expressed
LOC_Os02g51870OsAffx.12603.1.S1_at11/112+31764824..31765393hypothetical protein
LOC_Os02g51880Os.53073.1.S1_at11/112+31767487..31770532amine oxidase family protein, putative, expressed
LOC_Os02g51890Os.10870.1.S1_at11/112+31775709..31781275RNA recognition motif family protein, expressed
LOC_Os02g51900Os.52310.1.S1_at11/112+31781479..31783150Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51910Os.18839.1.S2_at11/112+31785141..31787932Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os02g51910Os.18839.1.S1_at11/112+31785141..31787932Cytokinin-O-glucosyltransferase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12602.1.S1_at--1083--6491Chr02:31758676..31758700 (25 bp)
GATATGGTCCATGCTGATGGCTTTC
LOC_Os02g51860
OsAffx.12602.1.S1_at--265--9551Chr02:31758653..31758677 (25 bp)
TCTATCACTTGAGAAGCACCAAAAG
LOC_Os02g51860
OsAffx.12602.1.S1_at--361--6731Chr02:31758621..31758645 (25 bp)
GTTCTACTCTTGATATATTCTTGGA
LOC_Os02g51860
OsAffx.12602.1.S1_at--712--10551Chr02:31758604..31758628 (25 bp)
TTCTTGGAAGTTGATCGCATCCTAC
LOC_Os02g51860
OsAffx.12602.1.S1_at--330--2791Chr02:31758597..31758621 (25 bp)
AAGTTGATCGCATCCTACGTCCAGA
LOC_Os02g51860
OsAffx.12602.1.S1_at--201--11NONE
CATCCTACGTCCAGAGGGTTGGGTT
NONE
OsAffx.12602.1.S1_at--1099--3251Chr02:31757974..31757995 (22 bp)
CAGAGGGTTGGGTTATAATCCGTGA
LOC_Os02g51860
OsAffx.12602.1.S1_at--738--10411Chr02:31757962..31757986 (25 bp)
TTATAATCCGTGACACTGCCCCTCT
LOC_Os02g51860
OsAffx.12602.1.S1_at--1119--1971Chr02:31757948..31757972 (25 bp)
ACTGCCCCTCTTATTGAAGCTGCAA
LOC_Os02g51860
OsAffx.12602.1.S1_at--332--651Chr02:31757795..31757819 (25 bp)
ATGAACTTATTCTTTACCACCTACA
LOC_Os02g51860
OsAffx.12602.1.S1_at--1071--10452Chr12:2442295..2442314 (20 bp)
TTACCACCTACATGGCTACATACTG
LOC_Os12g05394
Target Sequence
GATATGGTCCATGCTGATGGCTTTCTATCACTTGAGAAGCACCAAAAGCATAGATGTTCTACTCTTGATATATTCTTGGA
AGTTGATCGCATCCTACGTCCAGAGGGTTGGGTTATAATCCGTGACACTGCCCCTCTTATTGAAGCTGCAAGATCTGTTG
TAACACAGCTCAGGTGGGATGCCCGTATTTTGGATCTTGACATAGCTAGTGATGAAAAACTTCTGGTCTGTCAGAAGCCA
TTTATTAGAAAACAATGAACAGGACAGCTGACATGAGATATGAACTTATTCTTTACCACCTACATGGCTACATACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12602.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis