Browse Element(s) Details


OsAffx.12622.1.A1_at

Description tigr:9630.m05254
TID=OsAffx.12622.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5320011/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53160OsAffx.24843.1.S1_at11/112+32532070..32536217Phosphoprotein Phosphatase, putative
LOC_Os02g53170OsAffx.3052.2.S1_at10/112+32538231..32541177hypothetical protein
LOC_Os02g53170Os.29800.2.S1_at7/112+32538231..32541177hypothetical protein
LOC_Os02g53170Os.29800.2.S2_at4/112+32538231..32541177hypothetical protein
LOC_Os02g53180Os.12268.1.S1_at11/112+32552766..325567821-aminocyclopropane-1-carboxylate oxidase 1, putative, expressed
LOC_Os02g53200OsAffx.12622.1.A1_at11/112+32561185..32564173Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g53200Os.11714.1.S1_at10/112+32561185..32564173Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g53210Os.14402.1.S1_at11/112+32569455..32574680expressed protein
LOC_Os02g53220OsAffx.3053.1.S1_at10/112+32576818..32577731hypothetical protein
LOC_Os02g53230OsAffx.24844.1.S1_at11/112+32578698..32585503KOW motif family protein, expressed
LOC_Os02g53240NANA2+32586273..32586846hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12622.1.A1_at--464--10552Chr02:32561637..32561661 (25 bp)
TTCTTTCTTTTTGAACCGTGATCTT
LOC_Os02g53200
OsAffx.12622.1.A1_at--905--10271Chr02:32561634..32561658 (25 bp)
TTTCTTTTTGAACCGTGATCTTACT
LOC_Os02g53200
OsAffx.12622.1.A1_at--94--3551Chr02:32561631..32561655 (25 bp)
CTTTTTGAACCGTGATCTTACTGGG
LOC_Os02g53200
OsAffx.12622.1.A1_at--689--8971Chr02:32561626..32561650 (25 bp)
TGAACCGTGATCTTACTGGGTGATT
LOC_Os02g53200
OsAffx.12622.1.A1_at--750--4231Chr02:32561622..32561646 (25 bp)
CCGTGATCTTACTGGGTGATTGTCT
LOC_Os02g53200
OsAffx.12622.1.A1_at--610--431Chr02:32561617..32561641 (25 bp)
ATCTTACTGGGTGATTGTCTATTCC
LOC_Os02g53200
OsAffx.12622.1.A1_at--230--9931Chr02:32561613..32561637 (25 bp)
TACTGGGTGATTGTCTATTCCATTG
LOC_Os02g53200
OsAffx.12622.1.A1_at--954--7751Chr02:32561608..32561632 (25 bp)
GGTGATTGTCTATTCCATTGTTTGC
LOC_Os02g53200
OsAffx.12622.1.A1_at--102--6611Chr02:32561605..32561629 (25 bp)
GATTGTCTATTCCATTGTTTGCAGA
LOC_Os02g53200
OsAffx.12622.1.A1_at--684--7151Chr02:32561601..32561625 (25 bp)
GTCTATTCCATTGTTTGCAGAGATG
LOC_Os02g53200
OsAffx.12622.1.A1_at--19--4331Chr02:32561594..32561618 (25 bp)
CCATTGTTTGCAGAGATGGGCAAGT
LOC_Os02g53200
Target Sequence 
TTCTTTCTTTTTGAACCGTGATCTTACTGGGTGATTGTCTATTCCATTGTTTGCAGAGATGGGCAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12622.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis