Browse Element(s) Details


OsAffx.12638.1.S1_at

Description tigr:9630.m05392
TID=OsAffx.12638.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g543809/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54310OsAffx.3065.1.S1_at11/112+33295718..33297263expressed protein
LOC_Os02g54320NANA2+33300722..33301896hypothetical protein
LOC_Os02g54330OsAffx.12637.1.S1_at11/112+33306895..33308136F-box domain containing protein
LOC_Os02g54340Os.56032.1.S1_x_at10/112+33309335..3331333326S protease regulatory subunit 7, putative, expressed
LOC_Os02g54340Os.14993.1.A1_at10/112+33309335..3331333326S protease regulatory subunit 7, putative, expressed
LOC_Os02g54350OsAffx.3066.1.S1_at10/112+33313919..33314589expressed protein
LOC_Os02g54360OsAffx.3067.1.S1_at11/112+33316061..33316627expressed protein
LOC_Os02g54370Os.54364.1.S1_at11/112+33318671..33320055hypro1, putative, expressed
LOC_Os02g54380OsAffx.12638.1.S1_at9/112+33321195..33322542hypothetical protein
LOC_Os02g54390OsAffx.3068.1.S1_x_at11/112+33324640..33325563hypro1, putative
LOC_Os02g54400Os.14491.2.S1_x_at2/112+33328089..33331789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g54400Os.47463.1.S1_x_at1/112+33328089..33331789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g54410OsAffx.21289.1.S1_at1/112+33334661..33339617transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g54420OsAffx.24864.1.S1_x_at11/112+33340465..33341388hypro1, putative, expressed
LOC_Os02g54430OsAffx.9060.1.S1_at6/112+33343419..33345131transposon protein, putative, Pong sub-class
LOC_Os02g54440Os.41074.1.S1_at3/112+33345609..33347572transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12638.1.S1_at--585--731Chr02:33321225..33321249 (25 bp)
ATGTTCTCGAGCACCGCCGGTGCCG
LOC_Os02g54380
OsAffx.12638.1.S1_at--476--3791Chr02:33321257..33321281 (25 bp)
CTCCGATCCTCCACTGGGTGAGGTT
LOC_Os02g54380
OsAffx.12638.1.S1_at--240--571Chr02:33321262..33321286 (25 bp)
ATCCTCCACTGGGTGAGGTTGCACA
LOC_Os02g54380
OsAffx.12638.1.S1_at--673--8191Chr02:33321290..33321314 (25 bp)
GGAAGATGACGGTGCAAGCAGCCAA
LOC_Os02g54380
OsAffx.12638.1.S1_at--858--5751Chr02:33321297..33321321 (25 bp)
GACGGTGCAAGCAGCCAAGCAGGCA
LOC_Os02g54380
OsAffx.12638.1.S1_at--1156--7331Chr02:33321301..33321325 (25 bp)
GTGCAAGCAGCCAAGCAGGCACCGA
LOC_Os02g54380
OsAffx.12638.1.S1_at--379--3231Chr02:33321312..33321336 (25 bp)
CAAGCAGGCACCGACGAGAGTACAA
LOC_Os02g54380
OsAffx.12638.1.S1_at--665--4991Chr02:33321315..33321339 (25 bp)
GCAGGCACCGACGAGAGTACAAGTC
LOC_Os02g54380
OsAffx.12638.1.S1_at--820--5771NONE
GACGAGAGTACAAGTCGGCTCAGAT
NONE
OsAffx.12638.1.S1_at--754--7011NONE
GTACAAGTCGGCTCAGATTCGTAGT
NONE
OsAffx.12638.1.S1_at--390--2851Chr02:33321335..33321857 (25 bp)
AAGTCGGCTCAGATTCGTAGTATTA
LOC_Os02g54380
Target Sequence 
ATGTTCTCGAGCACCGCCGGTGCCGCGTCCTCCTCCGATCCTCCACTGGGTGAGGTTGCACACGGGGAAGATGACGGTGC
AAGCAGCCAAGCAGGCACCGACGAGAGTACAAGTCGGCTCAGATTCGTAGTATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis