Browse Element(s) Details


OsAffx.12668.1.S1_at

Description tigr:9630.m05616
TID=OsAffx.12668.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=P21-Rho-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5658011/11P21-Rho-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56540Os.7967.1.S1_at11/112+34626439..34630743Kinesin motor domain containing protein, expressed
LOC_Os02g56550Os.18740.1.S1_at10/112+34632017..34635209ABC transporter family protein, expressed
LOC_Os02g56560Os.12673.1.S1_at11/112+34639003..34643257Casein kinase I, putative, expressed
LOC_Os02g56570Os.50737.1.S1_at11/112+34648356..34652905RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os02g56570Os.50736.1.S1_at11/112+34648356..34652905RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os02g56570OsAffx.7999.1.S1_at1/112+34648356..34652905RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os02g56580OsAffx.12668.1.S1_at11/112+34654229..34655050P21-Rho-binding domain containing protein
LOC_Os02g56590OsAffx.24896.1.S1_at11/112+34661647..34664054hypothetical protein
LOC_Os02g56600Os.51120.1.S1_at11/112+34667123..34670444NAC-domain containing protein 21/22, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000902biological_processcellular morphogenesis
GO:0007204biological_processelevation of cytosolic calcium ion concentration
GO:0009860biological_processpollen tube growth
GO:0010215biological_processcellulose microfibril organization
GO:0030834biological_processregulation of actin filament depolymerization
GO:0031122biological_processcytoplasmic microtubule organization and biogenesis
GO:0050848biological_processregulation of calcium-mediated signaling
GO:0050850biological_processpositive regulation of calcium-mediated signaling
GO:0005737cellular_componentcytoplasm
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0016324cellular_componentapical plasma membrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12668.1.S1_at--780--451Chr02:34654259..34654514 (25 bp)
ATCTCACAAATTTTCGATCCGAGCG
LOC_Os02g56580
OsAffx.12668.1.S1_at--507--3291Chr02:34654265..34654520 (25 bp)
CAAATTTTCGATCCGAGCGTGAAGG
LOC_Os02g56580
OsAffx.12668.1.S1_at--295--8131Chr02:34654539..34654563 (25 bp)
GGAACCCGACGGACGTGAAGCACGT
LOC_Os02g56580
OsAffx.12668.1.S1_at--223--2091Chr02:34654569..34654593 (25 bp)
ACATCGGCTGGGACAACGCCTCCGT
LOC_Os02g56580
OsAffx.12668.1.S1_at--116--7111Chr02:34654592..34654616 (25 bp)
GTCACCGCGCCCAGCTGGGTGATCG
LOC_Os02g56580
OsAffx.12668.1.S1_at--240--771Chr02:34654656..34654680 (25 bp)
ATGTCTCTAACTGCTCCGATCACTG
LOC_Os02g56580
OsAffx.12668.1.S1_at--41--9811Chr02:34654663..34654687 (25 bp)
TAACTGCTCCGATCACTGGTCGCAG
LOC_Os02g56580
OsAffx.12668.1.S1_at--789--4791Chr02:34654668..34654692 (25 bp)
GCTCCGATCACTGGTCGCAGATGAA
LOC_Os02g56580
OsAffx.12668.1.S1_at--808--6431Chr02:34654673..34654697 (25 bp)
GATCACTGGTCGCAGATGAACGAGT
LOC_Os02g56580
OsAffx.12668.1.S1_at--970--1931Chr02:34654677..34654701 (25 bp)
ACTGGTCGCAGATGAACGAGTTCAA
LOC_Os02g56580
OsAffx.12668.1.S1_at--996--8351Chr02:34654757..34654781 (25 bp)
GGCGGCAGAGCGGACCAGGCGGAGC
LOC_Os02g56580
Target Sequence 
ATCTCACAAATTTTCGATCCGAGCGTGAAGGAGCCGGAGATGCAGATCGGGAACCCGACGGACGTGAAGCACGTCGCGCA
CATCGGCTGGGACAACGCCTCCGTCACCGCGCCCAGCTGGGTGATCGCCGCCGCCTTGCTCCTCCCCCCCGATCGCGCCA
TCTCCCATGTCTCTAACTGCTCCGATCACTGGTCGCAGATGAACGAGTTCAAGCCAACGGCGGGGGGCACGGAAGGCGGC
GAGGCGGAGGAGAACCAAGGAGGAGGCGGCGGCAGAGCGGACCAGGCGGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12668.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis