Browse Element(s) Details


OsAffx.12708.1.S1_x_at

Description tigr:9631.m00125
TID=OsAffx.12708.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0218011/11Cytochrome P450 84A1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02150Os.16247.1.S1_s_at11/113+676538..687033Adaptin N terminal region family protein, expressed
LOC_Os03g02160Os.9553.1.S1_at11/113+695792..699149Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os03g02170Os.53878.1.S1_at11/113+699458..703572expressed protein
LOC_Os03g02180Os.16138.1.S1_s_at11/113+704561..706349Cytochrome P450 84A1, putative, expressed
LOC_Os03g02180OsAffx.12708.1.S1_x_at11/113+704561..706349Cytochrome P450 84A1, putative, expressed
LOC_Os03g02190Os.50750.1.S1_at11/113+710833..712592Protein kinase domain containing protein, expressed
LOC_Os03g02200Os.2298.1.S1_at11/113+714528..718122Thymidine kinase, putative, expressed
LOC_Os03g02200OsAffx.31822.1.A1_at3/113+714528..718122Thymidine kinase, putative, expressed
LOC_Os03g02210Os.56285.1.S1_at11/113+718729..721497F-box domain containing protein, expressed
LOC_Os03g02230NANA3+722557..723153hypothetical protein
LOC_Os03g02240Os.39576.1.A1_s_at11/113+730369..734080expressed protein
LOC_Os03g02240OsAffx.24964.3.S1_x_at1/113+730369..734080expressed protein
LOC_Os03g02240OsAffx.2477.1.S1_x_at1/113+730369..734080expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0004497molecular_functionmonooxygenase activity
GO:0016711molecular_functionflavonoid 3'-monooxygenase activity
GO:0019825molecular_functionoxygen binding
GO:0046424molecular_functionferulate 5-hydroxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12708.1.S1_x_at--482--7491Chr03:705041..705065 (25 bp)
GTGGTCAACGTGTGGAGCGTCGGCC
LOC_Os03g02180
OsAffx.12708.1.S1_x_at--690--4211Chr03:704878..704902 (25 bp)
CCGCCATCGTGCTCGGGATGTACGA
LOC_Os03g02180
OsAffx.12708.1.S1_x_at--682--751Chr03:704861..704885 (25 bp)
ATGTACGAGCTGGAGCTCGTCGTCG
LOC_Os03g02180
OsAffx.12708.1.S1_x_at--175--9371Chr03:704779..704803 (25 bp)
TCGACATGGCGGACGGCTTCGGCCT
LOC_Os03g02180
OsAffx.12708.1.S1_x_at--1161--771Chr03:704696..704720 (25 bp)
ATGTGACGCGCGTTCTCGATTTGGC
LOC_Os03g02180
OsAffx.12708.1.S1_x_at--667--10231Chr03:704677..704701 (25 bp)
TTTGGCGCGAGAGATGCGCAACGCA
LOC_Os03g02180
OsAffx.12708.1.S1_x_at--642--4591Chr03:704662..704686 (25 bp)
GCGCAACGCAGCTCGAAGTGTGACT
LOC_Os03g02180
OsAffx.12708.1.S1_x_at--906--8931Chr03:704642..704666 (25 bp)
TGACTGTGACAGTGTGAGCGTGTAA
LOC_Os03g02180
OsAffx.12708.1.S1_x_at--81--5891Chr03:704627..704651 (25 bp)
GAGCGTGTAATCTGGTGTGGACATC
LOC_Os03g02180
OsAffx.12708.1.S1_x_at--669--3891Chr03:704616..704640 (25 bp)
CTGGTGTGGACATCGTATGCATCAT
LOC_Os03g02180
OsAffx.12708.1.S1_x_at--947--6911Chr03:704602..704626 (25 bp)
GTATGCATCATGTGTGCTTATGGAT
LOC_Os03g02180
Target Sequence 
GTGGTCAACGTGTGGAGCGTCGGCCGCGACGCCGGCGCGTGGAAGGGCGACGCCGGCGCGTTCCGGCCGGCGAGGTTCAT
GGCGGGCGGCGAGGCGGCGGGGATGGACCTCAGGGGCGGATGCTTCGAGCTCCTGCCGTTCGGGTCGGGGCGGAGGGCGT
GCCCCGCCATCGTGCTCGGGATGTACGAGCTGGAGCTCGTCGTCGCGCGCCTCGTCCACGCGTTCGGGTGGGCGCCGCCG
GGCGGCGTGGCGCCGGAGGAGCTCGACATGGCGGACGGCTTCGGCCTCACCGCGCCGCGCGCCGCGAGGCTCCGCGCCGT
GCCGACGCCCCGGCTCACCTGCCCGATGTGACGCGCGTTCTCGATTTGGCGCGAGAGATGCGCAACGCAGCTCGAAGTGT
GACTGTGACAGTGTGAGCGTGTAATCTGGTGTGGACATCGTATGCATCATGTGTGCTTATGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12708.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis