Browse Element(s) Details


OsAffx.12711.2.S1_at

Description tigr:9630.m01095
TID=OsAffx.12711.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1210011/11hypothetical protein
LOC_Os02g396502/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12030OsAffx.24926.1.S1_x_at11/112+6247083..6250599Leucine Rich Repeat family protein
LOC_Os02g12030OsAffx.24926.3.S1_at1/112+6247083..6250599Leucine Rich Repeat family protein
LOC_Os02g12040OsAffx.24926.3.S1_at11/112+6254346..6256373Leucine Rich Repeat family protein
LOC_Os02g12050OsAffx.11996.1.S1_at10/112+6259006..6260059hypothetical protein
LOC_Os02g12060OsAffx.2581.1.S1_at11/112+6261071..6261623proteinase inhibitor Rgpi9, putative
LOC_Os02g12070OsAffx.11997.1.S1_at11/112+6265995..6267117expressed protein
LOC_Os02g12080OsAffx.11998.1.S1_s_at11/112+6268374..6269146expressed protein
LOC_Os02g12090Os.47959.1.S1_at5/112+6270427..6271229hypothetical protein
LOC_Os02g12100OsAffx.12711.2.S1_x_at11/112+6274686..6279131hypothetical protein
LOC_Os02g12100OsAffx.12711.2.S1_at11/112+6274686..6279131hypothetical protein
LOC_Os02g12100OsAffx.12711.4.S1_at2/112+6274686..6279131hypothetical protein
LOC_Os02g12110NANA2+6298111..6298881retrotransposon protein, putative, unclassified
LOC_Os02g12120Os.45957.4.S1_x_at5/112+6299213..6310619retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12120Os.39411.1.A1_at1/112+6299213..6310619retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12120Os.42235.1.S1_x_at1/112+6299213..6310619retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g12120Os.42235.1.S1_at1/112+6299213..6310619retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12711.2.S1_at--1080--10213Chr02:6278265..6278288 (24 bp)
TATTGTCGAGGAGACCAAAGGTGCA
LOC_Os02g12100
OsAffx.12711.2.S1_at--860--9372Chr02:6278270..6278680 (25 bp)
TCGAGGAGACCAAAGGTGCAGGACT
LOC_Os02g12100
OsAffx.12711.2.S1_at--536--1611Chr02:6278687..6278711 (25 bp)
AGCTGTTGTACTGTCCAACTCCATG
LOC_Os02g12100
OsAffx.12711.2.S1_at--1095--8811Chr02:6278690..6278714 (25 bp)
TGTTGTACTGTCCAACTCCATGAAT
LOC_Os02g12100
OsAffx.12711.2.S1_at--805--8751Chr02:6278693..6278717 (25 bp)
TGTACTGTCCAACTCCATGAATATG
LOC_Os02g12100
OsAffx.12711.2.S1_at--703--9911Chr02:6278695..6278719 (25 bp)
TACTGTCCAACTCCATGAATATGGG
LOC_Os02g12100
OsAffx.12711.2.S1_at--119--3891Chr02:6278697..6278721 (25 bp)
CTGTCCAACTCCATGAATATGGGCT
LOC_Os02g12100
OsAffx.12711.2.S1_at--945--3373Chr02:6345011..6345194 (25 bp)
CAGCCACAAAGCAGACTACTAGAGT
NONE
OsAffx.12711.2.S1_at--53--2353Chr02:6345018..6345201 (25 bp)
AAAGCAGACTACTAGAGTCACTGAG
NONE
OsAffx.12711.2.S1_at--112--5053Chr02:6345182..6345204 (23 bp)
GCAGACTACTAGAGTCACTGAGTCA
NONE
OsAffx.12711.2.S1_at--56--5713Chr02:6345183..6345207 (25 bp)
GACTACTAGAGTCACTGAGTCAGCA
NONE
Target Sequence 
TATTGTCGAGGAGACCAAAGGTGCAGGACTGCAGGGAGCTGTTGTACTGTCCAACTCCATGAATATGGGCTGCTCGCATG
GTCTTCCTGTGCTGGCGAGGGCATCGGCTGGTACTGCAGGCTTGGCCGCTGCAAGGGGTGCCGGCGCCGTTGGCAGGGCC
CAGCTGTCCCTGCTCCCAAGGGACGACCATGACTGTTGCAGCCATAGTGGTGCCCACGATTTGCAAGGCAGTGAATGTGA
ATTAACGACATGGTCAGCCACAAAGCAGACTACTAGAGTCACTGAGTCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12711.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis