Browse Element(s) Details


OsAffx.12764.1.S1_at

Description tigr:9637.m02339
TID=OsAffx.12764.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g267708/11expressed protein
LOC_Os03g073501/11glycosyl transferase family 2 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26730Os.9366.1.S1_at10/119+16235628..1623979220 kDa chaperonin, chloroplast precursor, putative, expressed
LOC_Os09g26730Os.16370.1.S1_at4/119+16235628..1623979220 kDa chaperonin, chloroplast precursor, putative, expressed
LOC_Os09g26740NANA9+16244789..16245313retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g26750NANA9+16245598..16246799hypothetical protein
LOC_Os09g26760OsAffx.30045.1.S1_at11/119+16251172..16256557DNA repair metallo-beta-lactamase family protein
LOC_Os09g26770Os.57123.1.S1_at11/119+16258677..16264873expressed protein
LOC_Os09g26770OsAffx.12764.1.S1_at8/119+16258677..16264873expressed protein
LOC_Os09g26770OsAffx.12764.2.S1_x_at4/119+16258677..16264873expressed protein
LOC_Os09g26770Os.12963.1.S1_at3/119+16258677..16264873expressed protein
LOC_Os09g26770OsAffx.12764.2.S1_at3/119+16258677..16264873expressed protein
LOC_Os09g26780Os.48064.1.S1_at10/119+16272521..16274267ZIM motif family protein, expressed
LOC_Os09g26790OsAffx.8028.1.S1_x_at1/119+16279241..16279480hypothetical protein
LOC_Os09g26800Os.27736.1.S1_at11/119+16281842..16286188glycoside hydrolase family 28 protein, putative, expressed
LOC_Os09g26810Os.52535.1.S1_at11/119+16286915..16289735Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
LOC_Os09g26810Os.52535.1.S1_x_at10/119+16286915..16289735Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009294biological_processDNA mediated transformation
GO:0009618biological_processresponse to pathogenic bacteria
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12764.1.S1_at--130--3671Chr09:16263086..16263110 (25 bp)
CTTACGTGAACTAATCATGCCTGGT
LOC_Os09g26770
OsAffx.12764.1.S1_at--14--7371Chr09:16263091..16263115 (25 bp)
GTGAACTAATCATGCCTGGTCCTAA
LOC_Os09g26770
OsAffx.12764.1.S1_at--673--2531Chr09:16263094..16263118 (25 bp)
AACTAATCATGCCTGGTCCTAACAT
LOC_Os09g26770
OsAffx.12764.1.S1_at--423--9611Chr09:16263100..16263124 (25 bp)
TCATGCCTGGTCCTAACATCACTGA
LOC_Os09g26770
OsAffx.12764.1.S1_at--609--7771Chr09:16263108..16263132 (25 bp)
GGTCCTAACATCACTGATCTGCCTA
LOC_Os09g26770
OsAffx.12764.1.S1_at--735--9811NONE
TAACATCACTGATCTGCCTACAGCT
NONE
OsAffx.12764.1.S1_at--416--6391Chr09:16263123..16263174 (25 bp)
GATCTGCCTACAGCTACTATTAACG
LOC_Os09g26770
OsAffx.12764.1.S1_at--605--8471Chr09:16263220..16263367 (25 bp)
TGGCTGTACGCCTGTTAAGAGTGAA
LOC_Os09g26770
OsAffx.12764.1.S1_at--758--3871Chr09:16263223..16263370 (25 bp)
CTGTACGCCTGTTAAGAGTGAACTC
LOC_Os09g26770
OsAffx.12764.1.S1_at--783--1311Chr03:3711690..3711846 (25 bp)
AGATGGACTTGTGGGCGTATCTGTA
LOC_Os03g07350
OsAffx.12764.1.S1_at--1122--9511NONE
TCTACCTCCTGGAGGGCTTTTCCGG
NONE
Target Sequence 
CTTACGTGAACTAATCATGCCTGGTCCTAACATCACTGATCTGCCTACAGCTACTATTAACGAAGCAGGAGGTTGGAAGG
ATCACACAACTGTGGAAGACATGGACTTGGCTGTACGCCTGTTAAGAGTGAACTCCCAAGTACCTTCAAAGCCTACCGAC
ATCGGCAGCATAGATGGACTTGTGGGCGTATCTGTATGGAAAAAACTTCATCTACTCTACAGCTTTTTCTTCGTAAGGAG
GGTCGTCGCTCCCATCCTGACCTTCCTGTTCTACCGTGTTGTGATTCCGCTGTCTGTCATGGTCCCTGAAATCAGCATTC
CTGTCTGGGGGATGATTCTATTTGAGAATGTCATGGCCATGCACCGAATGCGTGCAGCTCTAACAGGCTTGCTCGAGACC
ATGAATGTCAATCAGTGGGTGGTTACTGAGAAGGTTGGTGATCATGTAAAGGACAAGCTTGAAGTCCCTCTTCTTGAACC
ATTGAAGCCAACAGACTGCGTCGAGAGGATTTACATTCCTGAGCTCGTGGTCGCGTTCTACCTCCTGGAGGGCTTTTCCG
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis