Browse Element(s) Details


OsAffx.12779.1.S1_at

Description gb:NM_186507.1
DB_XREF= gi:34900099
TID=OsAffx.12779.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (OJ1116_C08.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6529011/11retrotransposon protein, putative, unclassified
LOC_Os08g436549/11MATE efflux family protein, expressed
LOC_Os09g334701/11Peroxisomal membrane carrier protein, putative, expressed
LOC_Os07g103901/11cleavage and polyadenylation specificity factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65230Os.2328.1.S1_at11/111+38180254..38184359Protein kinase domain containing protein, expressed
LOC_Os01g65240Os.31886.1.S1_at11/111+38186938..38188979transposon protein, putative, Pong sub-class, expressed
LOC_Os01g65250OsAffx.21702.1.S1_at11/111+38189484..38191600transposon protein, putative, Pong sub-class
LOC_Os01g65260Os.30033.1.S1_at11/111+38192962..38194909Amidophosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os01g65270OsAffx.9516.1.S1_at11/111+38201305..38202138retrotransposon protein, putative, unclassified
LOC_Os01g65280OsAffx.2412.1.S1_x_at11/111+38205285..38206586hypothetical protein
LOC_Os01g65280OsAffx.2412.1.S1_at11/111+38205285..38206586hypothetical protein
LOC_Os01g65290OsAffx.12779.1.S1_at11/111+38208253..38210756retrotransposon protein, putative, unclassified
LOC_Os01g65300NANA1+38212812..38213426retrotransposon protein, putative, unclassified
LOC_Os01g65310Os.42329.1.A1_at11/111+38214459..38217304Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os01g65310Os.25066.1.S1_s_at11/111+38214459..38217304Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os01g65320Os.6400.1.S1_a_at11/111+38217483..38224296expressed protein
LOC_Os01g65330Os.9187.1.S1_at11/111+38225796..38233007expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0009835biological_processripening
GO:0015884biological_processfolic acid transport
GO:0005634cellular_componentnucleus
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005778cellular_componentperoxisomal membrane
GO:0009507cellular_componentchloroplast
GO:0009941cellular_componentchloroplast envelope
GO:0016020cellular_componentmembrane
GO:0003676molecular_functionnucleic acid binding
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
GO:0008517molecular_functionfolic acid transporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12779.1.S1_at--156--8735Chr03:4237215..4237239 (25 bp)
TGTCTCTGTCTCTTGTTCCGTTCCA
NONE
OsAffx.12779.1.S1_at--196--9475Chr03:4237219..4237243 (25 bp)
TCTGTCTCTTGTTCCGTTCCATTAG
NONE
OsAffx.12779.1.S1_at--176--8815Chr03:4237228..4237252 (25 bp)
TGTTCCGTTCCATTAGCCTTCAAAA
NONE
OsAffx.12779.1.S1_at--172--1175Chr03:4237282..4237306 (25 bp)
AGTCAATCACTATATACACCTGCTG
NONE
OsAffx.12779.1.S1_at--809--4775Chr03:4237303..4237327 (25 bp)
GCTGCTGCTGGTTGCTCAGATGCTG
NONE
OsAffx.12779.1.S1_at--696--3835Chr03:4237307..4237331 (25 bp)
CTGCTGGTTGCTCAGATGCTGCCGC
NONE
OsAffx.12779.1.S1_at--641--83312Chr12:3649256..3649331 (25 bp)
GGCTGCTGGCTGCTGCGAGGCGAGG
NONE
OsAffx.12779.1.S1_at--873--5794Chr03:4237475..4237499 (25 bp)
GACGCGGTGGGACGGCGCCTTGAGA
NONE
OsAffx.12779.1.S1_at--809--1675Chr03:4237611..4237635 (25 bp)
AGCCGGCCAGGCGACCAGCAGTGGG
NONE
OsAffx.12779.1.S1_at--439--4633Chr05:8559372..8559392 (21 bp)
GCGATGCCGCGATCTGGATGCCGCA
NONE
OsAffx.12779.1.S1_at--633--6352Chr07:6259582..6259606 (25 bp)
GATGCCGCGATCTGGATGCCGCAGC
NONE
Target Sequence 
TGTCTCTGTCTCTTGTTCCGTTCCATTAGCCTTCAAAAAAAATGATAGAGCATTAGTAAAAGTGCAAAGTCAATCACTAT
ATACACCTGCTGCTGCTGGTTGCTCAGATGCTGCCGCTGGGCTGCTGGCTGCTGCGAGGCGAGGAGCCGTCGGCGTTGGT
GGCNGTGAGGAAGAGACTGCAGTGGTGGTGTCGTCGTCGCCTCGTCGGTGTGGTGGTTGTTCCGTCGNCGGCGGCGGTGG
TGGCGACGGTGAAACGGCGAGACGCGGTGGGACGGCGCCTTGAGATGGCGGGGACCGAGCAGGCCGGCGGAGGTGCGAGA
TGGTGGCGGCGGCCGGCGGCGAAACGACGAAGAGCAAGGGCGGCGCGAGATGGTGGGAGCGAGGACGGCGGGGGCCAGCC
GGCCAGGCGACCAGCAGTGGGCGGTGGGGCGCCGGCGCCACGGGCGGTGGGCGTGAGGGCACGCCGGCGCCGCGATGCCG
CGATCTGGATGCCGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12779.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis