Browse Element(s) Details


OsAffx.12797.1.S1_s_at

Description tigr:9631.m00863
TID=OsAffx.12797.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ras family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0914010/11Ras-related protein Rab-6A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09110Os.7871.1.S1_at10/113+4716817..4720428Mitochondrial carrier protein, expressed
LOC_Os03g09110Os.50644.2.S1_x_at1/113+4716817..4720428Mitochondrial carrier protein, expressed
LOC_Os03g09120Os.52977.1.S1_at11/113+4727821..4729370expressed protein
LOC_Os03g09130OsAffx.12928.1.S1_at11/113+4739728..4742218hypothetical protein
LOC_Os03g09140OsAffx.12797.1.S1_s_at10/113+4742874..4745483Ras-related protein Rab-6A, putative, expressed
LOC_Os03g09150Os.54842.1.S1_at11/113+4747685..4752191Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os03g09160OsAffx.12798.1.S1_at11/113+4754682..4755497expressed protein
LOC_Os03g09170OsAffx.12799.1.S1_s_at11/113+4759361..4760672AP2 domain containing protein, expressed
LOC_Os03g09180Os.52339.1.S1_at9/113+4765343..4768436PHP domain C-terminal region family protein, expressed
LOC_Os03g09190Os.52114.1.S1_at11/113+4768742..4772248Serine carboxypeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045045biological_processsecretory pathway
GO:0005624cellular_componentmembrane fraction
GO:0005739cellular_componentmitochondrion
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12797.1.S1_s_at--1049--10471Chr03:4743882..4743906 (25 bp)
TTACATCAGGGATTCTTCTGTGGCA
LOC_Os03g09140
OsAffx.12797.1.S1_s_at--170--10611Chr03:4743897..4743921 (25 bp)
TTCTGTGGCAGTGATTGTTTACGAT
LOC_Os03g09140
OsAffx.12797.1.S1_s_at--353--5011Chr03:4744181..4744205 (25 bp)
GCAGTCCTTTTTGAGTATATCGAAG
LOC_Os03g09140
OsAffx.12797.1.S1_s_at--539--911Chr03:4744232..4744256 (25 bp)
AGGCGGAGATGTGATCATCGTCCTT
LOC_Os03g09140
OsAffx.12797.1.S1_s_at--353--2791NONE
AAGAGGCAAATATCCACTGACGAAG
NONE
OsAffx.12797.1.S1_s_at--1117--5931Chr03:4744974..4744998 (25 bp)
GAGCACGGCGCCATGTTCATGGAAA
LOC_Os03g09140
OsAffx.12797.1.S1_s_at--551--1651Chr03:4745001..4745025 (25 bp)
AGCGCAAAAGCTGGATTCAACATCA
LOC_Os03g09140
OsAffx.12797.1.S1_s_at--1091--1951Chr03:4745137..4745161 (25 bp)
ACTGTTTCGCAAGATCGCTGCATCG
LOC_Os03g09140
OsAffx.12797.1.S1_s_at--304--7531Chr03:4745207..4745231 (25 bp)
GTGGACATAAACCTACGGCCTGCTG
LOC_Os03g09140
OsAffx.12797.1.S1_s_at--872--3031Chr03:4745318..4745342 (25 bp)
AATCGAGGTCGCTTCAGAGTTCAGA
LOC_Os03g09140
OsAffx.12797.1.S1_s_at--1001--9991Chr03:4745374..4745398 (25 bp)
TAGCTTGGATTGTCAGTGCCGATTC
LOC_Os03g09140
Target Sequence 
TTACATCAGGGATTCTTCTGTGGCAGTGATTGTTTACGATGTGACTGNCANGCAGTCCTTTTTGAGTATATCGAAGTGGA
TTGAAGAGGTAAATACACAACGAGGCGGAGATGTGATCATCGTCCTTGTTGGAAATAAAACAGACCTTGTTGACAAGAGG
CAAATATCCACTGACGAAGGAGAAGCCAAGGCACAGGAGCACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATT
CAACATCAAGCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCATCGGCAAAGCAGGAAGACA
TGGTGGACATAAACCTACGGCCTGCTGCCTCCGGGCAAATACCTTCAGGGGCAGAAGCACAAGAAGAACAGAAAGCAGGC
GGTTGTTCCTGCTGAGAGTTTTGTATTCAGGGAAATCGAGGTCGCTTCAGAGTTCAGACTTCAAATTAGTACACACAGTG
AATTTCAGGTAGCTTGGATTGTCAGTGCCGATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12797.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis