Browse Element(s) Details


OsAffx.12810.1.S1_at

Description tigr:9631.m00977
TID=OsAffx.12810.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g106309/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10600Os.24224.1.A1_at11/113+5380075..5385984expressed protein
LOC_Os03g10600OsAffx.3190.1.S1_at2/113+5380075..5385984expressed protein
LOC_Os03g10610Os.11595.1.S2_at2/113+5397127..5399081retrotransposon protein, putative, unclassified
LOC_Os03g10610OsAffx.10155.1.S1_at1/113+5397127..5399081retrotransposon protein, putative, unclassified
LOC_Os03g10610OsAffx.13325.1.S1_at1/113+5397127..5399081retrotransposon protein, putative, unclassified
LOC_Os03g10610OsAffx.10155.1.S1_x_at1/113+5397127..5399081retrotransposon protein, putative, unclassified
LOC_Os03g10620Os.11186.1.S1_at11/113+5401321..5405247hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g10630OsAffx.12810.1.S1_at9/113+5410221..5411099hypothetical protein
LOC_Os03g10640Os.50449.1.S1_at11/113+5413028..5419439Calcium-transporting ATPase 2, plasma membrane-type, putative, expressed
LOC_Os03g10650Os.11708.1.S1_at11/113+5420861..5423342Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g10660NANA3+5426394..5426609hypothetical protein
LOC_Os03g10670Os.11426.2.S1_x_at1/113+5432527..5432937hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12810.1.S1_at--530--6411Chr03:5410439..5410463 (25 bp)
GATCTCAATCCTGTTTTAGCAGGAC
LOC_Os03g10630
OsAffx.12810.1.S1_at--1028--10011Chr03:5410423..5410447 (25 bp)
TAGCAGGACTCTCAAGGTCCAGGGT
LOC_Os03g10630
OsAffx.12810.1.S1_at--629--4091NONE
CGACGAGATGCGAAGGAGTACTGAA
NONE
OsAffx.12810.1.S1_at--531--971Chr03:5410374..5410398 (25 bp)
AGGAGTACTGAAGGACCGCGCTTTT
LOC_Os03g10630
OsAffx.12810.1.S1_at--363--5311Chr03:5410365..5410389 (25 bp)
GAAGGACCGCGCTTTTGATAGGAAC
LOC_Os03g10630
OsAffx.12810.1.S1_at--765--10251Chr03:5410352..5410376 (25 bp)
TTTGATAGGAACGTGCACCGCGTCT
LOC_Os03g10630
OsAffx.12810.1.S1_at--661--1831Chr03:5410261..5410285 (25 bp)
ACGCGCACACGTTGCGTGTTCTGGA
LOC_Os03g10630
OsAffx.12810.1.S1_at--167--9151Chr03:5410249..5410273 (25 bp)
TGCGTGTTCTGGACTTCCCGTCGTT
LOC_Os03g10630
OsAffx.12810.1.S1_at--563--4191Chr03:5410233..5410257 (25 bp)
CCCGTCGTTCTCTGCGATGGGAAAG
LOC_Os03g10630
OsAffx.12810.1.S1_at--448--9491Chr03:5410225..5410249 (25 bp)
TCTCTGCGATGGGAAAGGCCGGAAA
LOC_Os03g10630
OsAffx.12810.1.S1_at--424--891NONE
AGGCCGGAAAGTGCACGGCGCATCA
NONE
Target Sequence 
GATCTCAATCCTGTTTTAGCAGGACTCTCAAGGTCCAGGGTCAACGTCATGGCGACGAGATGCGAAGGAGTACTGAAGGA
CCGCGCTTTTGATAGGAACGTGCACCGCGTCTTCTCCGCGGGGAAGGTGGTGGAAACGACGAGGCCACCCACCACTGTGC
TGCACGGTCTGCACCCCCACGCGCACACGTTGCGTGTTCTGGACTTCCCGTCGTTCTCTGCGATGGGAAAGGCCGGAAAG
TGCACGGCGCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12810.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis