Browse Element(s) Details


OsAffx.12818.1.S1_s_at

Description tigr:9631.m01007
TID=OsAffx.12818.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Mitochondrial ribosomal protein L51 S25 CI-B8 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1093011/11mitochondrial ribosomal protein L51/S25/CI-B8 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10870Os.50795.1.S1_at11/113+5565117..5567974integral membrane protein, putative, expressed
LOC_Os03g10880Os.47694.1.S1_at9/113+5568679..5571620transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g10890Os.19285.1.S1_at11/113+5573121..5575109Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g10900OsAffx.12816.1.S1_at11/113+5575945..5578899NB-ARC domain containing protein, expressed
LOC_Os03g10910OsAffx.12817.1.S1_at11/113+5586147..5588873NB-ARC domain containing protein, expressed
LOC_Os03g10920Os.53184.1.S1_at11/113+5588942..5591848expressed protein
LOC_Os03g10930Os.13629.1.S1_at11/113+5592502..5594589mitochondrial ribosomal protein L51/S25/CI-B8 family protein, putative, expressed
LOC_Os03g10930OsAffx.12818.1.S1_s_at11/113+5592502..5594589mitochondrial ribosomal protein L51/S25/CI-B8 family protein, putative, expressed
LOC_Os03g10940Os.5990.1.S1_at11/113+5595179..5599842Casein kinase II, alpha chain, putative, expressed
LOC_Os03g10950Os.10384.1.S1_at11/113+5604848..5606901protein phosphatase 2C family protein, putative, expressed
LOC_Os03g10960NANA3+5612434..5612967hypothetical protein
LOC_Os03g10970OsAffx.12820.1.S1_at11/113+5614531..5616582expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12818.1.S1_s_at--162--411Chr03:5593662..5593684 (23 bp)
ATCAGGGCTTTTATGGAGGCGCATC
LOC_Os03g10930
OsAffx.12818.1.S1_s_at--1157--871Chr03:5593646..5593670 (25 bp)
AGGCGCATCTTCCAGCTTTTAAGGA
LOC_Os03g10930
OsAffx.12818.1.S1_s_at--299--6071Chr03:5593593..5593617 (25 bp)
GAGTTAGTCCGTGGACAGCATCCTA
LOC_Os03g10930
OsAffx.12818.1.S1_s_at--463--5651Chr03:5593580..5593604 (25 bp)
GACAGCATCCTAACCTGAAGGGCAT
LOC_Os03g10930
OsAffx.12818.1.S1_s_at--854--2991Chr03:5592846..5592870 (25 bp)
AATGAGCGAGTTGTTTGTGTCCGAA
LOC_Os03g10930
OsAffx.12818.1.S1_s_at--1125--10211Chr03:5592833..5592857 (25 bp)
TTTGTGTCCGAAATTTAGCGCCCGA
LOC_Os03g10930
OsAffx.12818.1.S1_s_at--715--9991Chr03:5592818..5592842 (25 bp)
TAGCGCCCGAGGACATACTATTGCA
LOC_Os03g10930
OsAffx.12818.1.S1_s_at--930--9891Chr03:5592803..5592827 (25 bp)
TACTATTGCAAGCTACCAGGCTAAG
LOC_Os03g10930
OsAffx.12818.1.S1_s_at--687--911Chr03:5592786..5592810 (25 bp)
AGGCTAAGGAATTCTCTGGGCAGGA
LOC_Os03g10930
OsAffx.12818.1.S1_s_at--150--7771Chr03:5592757..5592781 (25 bp)
GGTGAAGCTGAGAACCAGACACGTA
LOC_Os03g10930
OsAffx.12818.1.S1_s_at--267--1411Chr03:5592741..5592765 (25 bp)
AGACACGTAACAAAGCGCCCCAGTG
LOC_Os03g10930
Target Sequence 
ATCAGGGCTTTTATGGAGGCGCATCTTCCAGCTTTTAAGGAAAAGAACCCCCACTTAGAGGTGGTGACAGAGTTAGTCCG
TGGACAGCATCCTAACCTGAAGGGCATTTACAAAAATCATAATGAGCGAGTTGTTTGTGTCCGAAATTTAGCGCCCGAGG
ACATACTATTGCAAGCTACCAGGCTAAGGAATTCTCTGGGCAGGAAAGTGGTGAAGCTGAGAACCAGACACGTAACAAAG
CGCCCCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12818.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis