Browse Element(s) Details


OsAffx.12845.1.S1_at

Description tigr:9631.m01309
TID=OsAffx.12845.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=T1N15.5
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g137509/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13710OsAffx.22940.2.S1_s_at11/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710Os.35344.3.S1_x_at11/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.1.S1_s_at11/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710Os.35344.18.S1_x_at10/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.5.S1_x_at10/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.5.S1_at9/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.3.S1_x_at9/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.2.S1_at7/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.31552.2.S1_at1/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13720Os.10452.1.S1_at11/113+7409707..7412707expressed protein
LOC_Os03g13730OsAffx.3231.1.S1_at11/113+7413096..7417135Translocase of chloroplast 34, putative, expressed
LOC_Os03g13730Os.8640.1.S1_at11/113+7413096..7417135Translocase of chloroplast 34, putative, expressed
LOC_Os03g13730OsAffx.28716.1.S1_s_at1/113+7413096..7417135Translocase of chloroplast 34, putative, expressed
LOC_Os03g13740Os.6244.1.S1_x_at11/113+7419455..7421070U-box domain containing protein, expressed
LOC_Os03g13740Os.6244.1.S1_at11/113+7419455..7421070U-box domain containing protein, expressed
LOC_Os03g13750Os.10466.1.S1_at10/113+7425053..7428664expressed protein
LOC_Os03g13750OsAffx.12845.1.S1_at9/113+7425053..7428664expressed protein
LOC_Os03g13760Os.18639.1.S1_at11/113+7428850..7432091Small nuclear ribonucleoprotein Sm D3, putative, expressed
LOC_Os03g13770Os.27347.1.S1_a_at11/113+7432674..7436825expressed protein
LOC_Os03g13780Os.35344.18.S1_x_at9/113+7437731..7443905transposon protein, putative, Mutator sub-class
LOC_Os03g13780Os.35344.3.S1_x_at9/113+7437731..7443905transposon protein, putative, Mutator sub-class
LOC_Os03g13780OsAffx.22940.5.S1_x_at3/113+7437731..7443905transposon protein, putative, Mutator sub-class
LOC_Os03g13790Os.14693.1.S2_at11/113+7448669..7454495myb family transcription factor, putative, expressed
LOC_Os03g13790Os.14693.1.S1_at11/113+7448669..7454495myb family transcription factor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12845.1.S1_at--472--10751NONE
TTGAGAAATCCGAATTGCTACTAGG
NONE
OsAffx.12845.1.S1_at--292--991Chr03:7427610..7427634 (25 bp)
AGGAGGAGAACTGGCCATACTTTGG
LOC_Os03g13750
OsAffx.12845.1.S1_at--169--5471Chr03:7427603..7427627 (25 bp)
GAACTGGCCATACTTTGGCAACCCT
LOC_Os03g13750
OsAffx.12845.1.S1_at--1018--10851Chr03:7427589..7427613 (25 bp)
TTGGCAACCCTCTTTGGCCATACAT
LOC_Os03g13750
OsAffx.12845.1.S1_at--1053--10851Chr03:7427576..7427600 (25 bp)
TTGGCCATACATCCACCATTATTCT
LOC_Os03g13750
OsAffx.12845.1.S1_at--632--4311Chr03:7427561..7427585 (25 bp)
CCATTATTCTCTTCGGTCTGGAGGA
LOC_Os03g13750
OsAffx.12845.1.S1_at--59--3911Chr03:7427544..7427568 (25 bp)
CTGGAGGAATTGTTTGTATCTGTAC
LOC_Os03g13750
OsAffx.12845.1.S1_at--325--6911Chr03:7427529..7427553 (25 bp)
GTATCTGTACATCTCATACCCTGAA
LOC_Os03g13750
OsAffx.12845.1.S1_at--206--311Chr03:7427514..7427538 (25 bp)
ATACCCTGAAGGATGTTCTACTTCC
LOC_Os03g13750
OsAffx.12845.1.S1_at--15--10591Chr03:7427499..7427523 (25 bp)
TTCTACTTCCTGACATTGAATGTTT
LOC_Os03g13750
OsAffx.12845.1.S1_at--1100--8991NONE
TGAATGTTTGATCTTCAAGGCCCAG
NONE
Target Sequence 
TTGAGAAATCCGAATTGCTACTAGGAAAGGAGGAGAACTGGCCATACTTTGGCAACCCTCTTTGGCCATACATCCACCAT
TATTCTCTTCGGTCTGGAGGAATTGTTTGTATCTGTACATCTCATACCCTGAAGGATGTTCTACTTCCTGACATTGAATG
TTTGATCTTCAAGGCCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12845.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis