Browse Element(s) Details


OsAffx.12886.1.S1_at

Description tigr:9631.m01646
TID=OsAffx.12886.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to dof zinc finger protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1685011/11Dof domain, zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16824Os.24261.2.S1_at11/113+9308458..9314139Spotted leaf protein 11, putative, expressed
LOC_Os03g16824Os.24261.1.S1_at11/113+9308458..9314139Spotted leaf protein 11, putative, expressed
LOC_Os03g16840OsAffx.25113.1.S1_at11/113+9325892..9326798hypothetical protein
LOC_Os03g16850OsAffx.12886.1.S1_at11/113+9338517..9339986Dof domain, zinc finger family protein, expressed
LOC_Os03g16860Os.11029.1.S1_at11/113+9349211..9352126Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16870Os.16498.1.S1_at8/113+9352280..9354845expressed protein
LOC_Os03g16874Os.9995.1.S1_at10/113+9355035..9356774expressed protein
LOC_Os03g16880Os.54647.1.S1_at11/113+9356944..9361643Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16880Os.52782.1.S1_at1/113+9356944..9361643Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16890Os.8831.1.S1_at11/113+9361976..9366471glycosyltransferase family 14 protein, putative, expressed
LOC_Os03g16890Os.27502.1.S1_s_at1/113+9361976..9366471glycosyltransferase family 14 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0045449biological_processregulation of transcription
GO:0045941biological_processpositive regulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12886.1.S1_at--804--1731Chr03:9338939..9338963 (25 bp)
ACCATTGGCGCGTCACTCGAGCAGT
LOC_Os03g16850
OsAffx.12886.1.S1_at--236--411Chr03:9338875..9338899 (25 bp)
ATCAGTTCCCGTTCCTCGGAGGAGC
LOC_Os03g16850
OsAffx.12886.1.S1_at--811--4511Chr03:9338832..9338856 (25 bp)
GCCGCCGATGTACCAACTGGGACTG
LOC_Os03g16850
OsAffx.12886.1.S1_at--722--7631Chr03:9338814..9338838 (25 bp)
GGGACTGGAAGCTACTCGAGCAGCA
LOC_Os03g16850
OsAffx.12886.1.S1_at--1143--1991Chr03:9338801..9338825 (25 bp)
ACTCGAGCAGCAGGCACCGGAGCAA
LOC_Os03g16850
OsAffx.12886.1.S1_at--313--10451Chr03:9338756..9338780 (25 bp)
TTAGGGCAGACCAGTGCTACAGCCA
LOC_Os03g16850
OsAffx.12886.1.S1_at--818--4331Chr03:9338731..9338755 (25 bp)
CCACGTCAAGGCAGGAAGGTTCAAT
LOC_Os03g16850
OsAffx.12886.1.S1_at--605--6191Chr03:9338667..9338691 (25 bp)
GAGGCAGTACATGGCGGCTCTACGC
LOC_Os03g16850
OsAffx.12886.1.S1_at--663--3971Chr03:9338574..9338598 (25 bp)
CGGTGGCAGCTGGACAATGAACTTC
LOC_Os03g16850
OsAffx.12886.1.S1_at--36--5611Chr03:9338562..9338586 (25 bp)
GACAATGAACTTCCCTGGATTCCAT
LOC_Os03g16850
OsAffx.12886.1.S1_at--67--8571Chr03:9338547..9338571 (25 bp)
TGGATTCCATTCGTCATCAGGCGGC
LOC_Os03g16850
Target Sequence 
ACCATTGGCGCGTCACTCGAGCAGTGGAGAGTGCAGCAGCAGCAGCAGCAGCAGCCACAACAGCATCAGTTCCCGTTCCT
CGGAGGAGCACTCGAGCTTCCGCCGCCGCCGCCGATGTACCAACTGGGACTGGAAGCTACTCGAGCAGCAGGCACCGGAG
CAACGGCGGCGGCGGCGTTCACGTTAGGGCAGACCAGTGCTACAGCCACCACGTCAAGGCAGGAAGGTTCAATGAAACTG
GAAGATAGCAAAGGGCTGGAGATGAGCCTGCAGAGGCAGTACATGGCGGCTCTACGCCAAGGAGATGGTGTCTGGGGTAA
CAACAACGGCGGCAATGGCGGCAGCGACGGTGGCGGCAATGGCGGCGGTGGCAGCTGGACAATGAACTTCCCTGGATTCC
ATTCGTCATCAGGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12886.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis