Browse Element(s) Details


OsAffx.12930.1.S1_at

Description tigr:9631.m01869
TID=OsAffx.12930.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1893011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18890Os.27465.1.S1_at11/113+10563011..10565056glycosyl transferase family 8 protein, putative, expressed
LOC_Os03g18900NANA3+10570513..10571225expressed protein
LOC_Os03g18910Os.49999.1.S1_x_at11/113+10578122..10580561COBRA-like protein 7 precursor, putative, expressed
LOC_Os03g18930OsAffx.12930.1.S1_at11/113+10584007..10584580hypothetical protein
LOC_Os03g18940Os.49715.1.S1_at11/113+10585919..10591295exonuclease family protein, expressed
LOC_Os03g18950OsAffx.3272.1.S1_at10/113+10592566..10594614Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os03g18960OsAffx.3273.1.S1_at11/113+10596815..10599556calmodulin-binding protein, putative, expressed
LOC_Os03g18970Os.49654.1.S1_at11/113+10600735..10604430protein phosphatase 2C, putative, expressed
LOC_Os03g18980Os.54684.1.S1_at7/113+10609092..10614810Kinesin-4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12930.1.S1_at--96--2771Chr03:10584526..10584550 (25 bp)
AAGACGGTTGCTACGGACACTGAGA
LOC_Os03g18930
OsAffx.12930.1.S1_at--783--1911Chr03:10584523..10584547 (25 bp)
ACGGTTGCTACGGACACTGAGAGGA
LOC_Os03g18930
OsAffx.12930.1.S1_at--899--5611Chr03:10584467..10584491 (25 bp)
GACAACGTCGGCTGAGGAGAAGACC
LOC_Os03g18930
OsAffx.12930.1.S1_at--277--2592Chr04:22519279..22519553 (25 bp)
AACGTCGGCTGAGGAGAAGACCCCT
NONE
OsAffx.12930.1.S1_at--498--9452Chr04:22519276..22519297 (22 bp)
TCGGCTGAGGAGAAGACCCCTCCTA
NONE
OsAffx.12930.1.S1_at--769--971Chr03:10584453..10584477 (25 bp)
AGGAGAAGACCCCTCCTAGCGTCTA
LOC_Os03g18930
OsAffx.12930.1.S1_at--589--2771Chr03:10584449..10584472 (24 bp)
AAGACCCCTCCTAGCGTCTACAGGG
LOC_Os03g18930
OsAffx.12930.1.S1_at--376--4291Chr03:10584090..10584466 (25 bp)
CCTCCTAGCGTCTACAGGGACGAAA
LOC_Os03g18930
OsAffx.12930.1.S1_at--806--9131Chr03:10584088..10584464 (25 bp)
TCCTAGCGTCTACAGGGACGAAAAT
LOC_Os03g18930
OsAffx.12930.1.S1_at--964--7631Chr03:10584074..10584098 (25 bp)
GGGACGAAAATGAGACTGAGCGACA
LOC_Os03g18930
OsAffx.12930.1.S1_at--345--4111Chr03:10584070..10584094 (25 bp)
CGAAAATGAGACTGAGCGACAAATA
LOC_Os03g18930
Target Sequence 
AAGACGGTTGCTACGGACACTGAGAGGAAGCCAACCAGGACGGCGCCGACTGTGAGGAGGACAACGTCGGCTGAGGAGAA
GACCCCTCCTAGCGTCTACAGGGACGAAAATGAGACTGAGCGACAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12930.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis