Browse Element(s) Details


OsAffx.12956.1.S1_at

Description tigr:9631.m02064
TID=OsAffx.12956.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2077011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20730OsAffx.25169.1.S1_s_at11/113+11709748..11710398DnaJ domain containing protein, expressed
LOC_Os03g20730Os.26059.1.S1_x_at8/113+11709748..11710398DnaJ domain containing protein, expressed
LOC_Os03g20730Os.26059.1.S1_at2/113+11709748..11710398DnaJ domain containing protein, expressed
LOC_Os03g20740OsAffx.3285.1.S1_at11/113+11717989..11718691expressed protein
LOC_Os03g20750Os.5126.1.S1_at11/113+11721422..11726788mitochondrial import receptor subunit TOM40 homolog, putative, expressed
LOC_Os03g20760Os.55458.1.S1_at10/113+11730705..11732232Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g20770OsAffx.12956.1.S1_at11/113+11733805..11735597hypothetical protein
LOC_Os03g20780Os.12691.1.A1_a_at11/113+11748231..11752333ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20780Os.12691.3.S1_x_at11/113+11748231..11752333ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20780Os.12691.1.A1_x_at11/113+11748231..11752333ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20790Os.12691.1.A1_a_at11/113+11753063..11757242ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20790Os.12691.2.S1_a_at11/113+11753063..11757242ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20790Os.12691.3.S1_x_at11/113+11753063..11757242ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20790Os.12691.1.A1_x_at5/113+11753063..11757242ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed
LOC_Os03g20790Os.12691.4.S1_at1/113+11753063..11757242ETHYLENE-INSENSITIVE3-like 1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12956.1.S1_at--855--8911Chr03:11734178..11734202 (25 bp)
TGAGCTCCAGTGTCAGCCAGCTCCA
LOC_Os03g20770
OsAffx.12956.1.S1_at--147--6331Chr03:11734020..11734044 (25 bp)
GATGCAATGGCGCTCACCAGGGCAA
LOC_Os03g20770
OsAffx.12956.1.S1_at--511--5131Chr03:11733999..11734023 (25 bp)
GCAAAACCTCCTTGGGTAGCCATGT
LOC_Os03g20770
OsAffx.12956.1.S1_at--837--8611Chr03:11733987..11734011 (25 bp)
TGGGTAGCCATGTTCCCTTTCTCCA
LOC_Os03g20770
OsAffx.12956.1.S1_at--294--2131Chr03:11733953..11733977 (25 bp)
ACAGGTACATGCGACCGCTGAGGTT
LOC_Os03g20770
OsAffx.12956.1.S1_at--619--3831Chr03:11733936..11733960 (25 bp)
CTGAGGTTGCGGTCGACGTTGTACA
LOC_Os03g20770
OsAffx.12956.1.S1_at--1147--7791Chr03:11733926..11733950 (25 bp)
GGTCGACGTTGTACATGGCATCCTT
LOC_Os03g20770
OsAffx.12956.1.S1_at--572--8751Chr03:11733917..11733941 (25 bp)
TGTACATGGCATCCTTCCACTTGAT
LOC_Os03g20770
OsAffx.12956.1.S1_at--142--3631Chr03:11733904..11733928 (25 bp)
CTTCCACTTGATGCAACAACGCGGG
LOC_Os03g20770
OsAffx.12956.1.S1_at--987--1571Chr03:11733862..11733886 (25 bp)
AGCTCTTGTTGTCGTAGCTCCTGCG
LOC_Os03g20770
OsAffx.12956.1.S1_at--966--1591Chr03:11733847..11733871 (25 bp)
AGCTCCTGCGGCAGGCCTTGAGAGA
LOC_Os03g20770
Target Sequence 
TGAGCTCCAGTGTCAGCCAGCTCCAGCGGAGGCCCACGCGCATGGAGATGGGTGGATTTGGCGGCATAGTCGCTGGAGGA
GCGAGCATGGTTGGGGAGAGCAAATCTGGCAGTGGGGCGAGGCGCTGGGGGCTCGAGCTCCGGCCCGTTGTCGATGGGGA
TGCAATGGCGCTCACCAGGGCAAAACCTCCTTGGGTAGCCATGTTCCCTTTCTCCATCGCTACCGACAGGTACATGCGAC
CGCTGAGGTTGCGGTCGACGTTGTACATGGCATCCTTCCACTTGATGCAACAACGCGGGGTGGATGATCAGGACGGAGCT
CTTGTTGTCGTAGCTCCTGCGGCAGGCCTTGAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12956.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis