Browse Element(s) Details


OsAffx.13010.1.S1_x_at

Description tigr:9631.m02416
TID=OsAffx.13010.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g247708/11expressed protein
LOC_Os09g210404/11expressed protein
LOC_Os10g379702/11hypothetical protein
LOC_Os02g434901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24730Os.46762.1.S1_at11/113+14073184..14076758expressed protein
LOC_Os03g24730Os.17424.1.S1_x_at1/113+14073184..14076758expressed protein
LOC_Os03g24740OsAffx.3314.1.S1_at11/113+14078892..14079206hypothetical protein
LOC_Os03g24750NANA3+14081180..14081383hypothetical protein
LOC_Os03g24760OsAffx.25211.1.S1_x_at11/113+14086274..14088966Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24760OsAffx.25211.1.S1_at11/113+14086274..14088966Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g24770OsAffx.13010.1.S1_x_at8/113+14098148..14099149expressed protein
LOC_Os03g24770OsAffx.24701.1.S1_at3/113+14098148..14099149expressed protein
LOC_Os03g24780NANA3+14102097..14104926retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g24790NANA3+14105468..14107108transposon protein, putative, unclassified
LOC_Os03g24800OsAffx.22004.1.S1_at3/113+14107575..14110873retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g24800OsAffx.31069.1.S1_x_at1/113+14107575..14110873retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g24800OsAffx.3940.1.S1_at1/113+14107575..14110873retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g24800OsAffx.22004.2.S1_at1/113+14107575..14110873retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g24810OsAffx.25212.1.S1_at10/113+14115212..14116386hypothetical protein
LOC_Os03g24820Os.46762.1.S1_at2/113+14122793..14125467expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13010.1.S1_x_at--717--8392Chr03:14098180..14098204 (25 bp)
GGCCGCGACGGAGCCGGTGAAGACG
LOC_Os03g24770
OsAffx.13010.1.S1_x_at--8--2573Chr12:13727045..13727064 (20 bp)
AACTGATGGCCCCAGCGGTGACCTT
NONE
OsAffx.13010.1.S1_x_at--551--7752Chr03:14098235..14098259 (25 bp)
GGTGACCTTATGCAGCGGCAGTATA
LOC_Os03g24770
OsAffx.13010.1.S1_x_at--199--10132Chr03:14098243..14098267 (25 bp)
TATGCAGCGGCAGTATAAGGAGGAC
LOC_Os03g24770
OsAffx.13010.1.S1_x_at--980--3492Chr03:14098280..14098304 (25 bp)
CATGGCACACTTGTCGGCGACGACA
LOC_Os03g24770
OsAffx.13010.1.S1_x_at--6--3774Chr10:20011646..20011670 (25 bp)
CTCTTCCTCGCGGACGTGGTGGAGC
LOC_Os10g37970
OsAffx.13010.1.S1_x_at--78--5711NONE
GACTAGACGCGGTCAAGAGGCTCGA
NONE
OsAffx.13010.1.S1_x_at--543--2031NONE
ACTAGACGCGGTCAAGAGGCTCGAA
NONE
OsAffx.13010.1.S1_x_at--345--10031NONE
TAGACGCGGTCAAGAGGCTCGAAGC
NONE
OsAffx.13010.1.S1_x_at--315--3791Chr03:14098970..14098994 (25 bp)
CTCGAAGCGAGGATTCGCGAGGCGT
LOC_Os03g24770
OsAffx.13010.1.S1_x_at--136--6171Chr03:14098978..14099002 (25 bp)
GAGGATTCGCGAGGCGTGCGCGGCC
LOC_Os03g24770
Target Sequence 
GGCCGCGACGGAGCCGGTGAAGACGCCGGCCCCTCCTGCAACTGATGGCCCCAGCGGTGACCTTATGCAGCGGCAGTATA
AGGAGGACGCCGACGCCACCCATGGCACACTTGTCGGCGACGACACGGACGAGTCGCGCCGCCTCTTCCTCGCGGACGTG
GTGGAGCGACTAGACGCGGTCAAGAGGCTCGAAGCGAGGATTCGCGAGGCGTGCGCGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13010.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis