Browse Element(s) Details


OsAffx.13041.4.S1_x_at

Description tigr:9631.m02563
TID=OsAffx.13041.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative asparaginase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2610011/11transposon protein, putative, unclassified
LOC_Os01g556205/11transposon protein, putative, unclassified
LOC_Os04g514205/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26044Os.23303.1.A1_at11/113+14903961..14909158Glycosyltransferase, putative, expressed
LOC_Os03g26044Os.56873.1.S1_x_at10/113+14903961..14909158Glycosyltransferase, putative, expressed
LOC_Os03g26044Os.56873.1.S1_at10/113+14903961..14909158Glycosyltransferase, putative, expressed
LOC_Os03g26060OsAffx.13040.1.S1_at10/113+14912636..14914520hypothetical protein
LOC_Os03g26070OsAffx.25230.1.S1_at11/113+14915437..14916781hypothetical protein
LOC_Os03g26080Os.53762.1.S1_at11/113+14917235..14921065GDA1/CD39 family protein, expressed
LOC_Os03g26090Os.52953.1.S1_at11/113+14925421..14932055GWT1 family protein, expressed
LOC_Os03g26100OsAffx.13041.4.S1_x_at11/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100OsAffx.13041.4.S1_at9/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100OsAffx.13041.1.S1_at9/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100OsAffx.13041.1.S1_x_at6/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100Os.28110.1.S1_x_at1/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26120OsAffx.13042.1.S1_at10/113+14942489..14943389hypothetical protein
LOC_Os03g26130OsAffx.13043.1.S1_at11/113+14946361..14947502Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13041.4.S1_x_at--473--7272Chr03:14933690..14933714 (25 bp)
GTCCACCTGAGTCCTGCAGATCTTG
LOC_Os03g26100
OsAffx.13041.4.S1_x_at--93--9232Chr03:14933691..14933715 (25 bp)
TCCACCTGAGTCCTGCAGATCTTGA
LOC_Os03g26100
OsAffx.13041.4.S1_x_at--46--3373Chr04:27120632..27120651 (20 bp)
CACCTGAGTCCTGCAGATCTTGAGG
NONE
OsAffx.13041.4.S1_x_at--552--8873Chr04:27120632..27120655 (24 bp)
TGAGTCCTGCAGATCTTGAGGTCGT
NONE
OsAffx.13041.4.S1_x_at--926--3614Chr04:27120645..27120669 (25 bp)
CTTGAGGTCGTGGACTGGTCTGATT
NONE
OsAffx.13041.4.S1_x_at--542--6851Chr03:14933754..14933778 (25 bp)
GTTTGCAAGGTCTTCAGGTCGTAGA
LOC_Os03g26100
OsAffx.13041.4.S1_x_at--688--1411Chr03:14933776..14933800 (25 bp)
AGACAATAGCTACTTCATTACCGAG
LOC_Os03g26100
OsAffx.13041.4.S1_x_at--1067--972Chr03:14933829..14933849 (21 bp)
AGGAGGCTAACAGCATCTTGGAGGC
LOC_Os03g26100
OsAffx.13041.4.S1_x_at--1134--6192Chr03:14933831..14934069 (25 bp)
GAGGCTAACAGCATCTTGGAGGCCA
LOC_Os03g26100
OsAffx.13041.4.S1_x_at--347--8312Chr03:14933833..14934071 (25 bp)
GGCTAACAGCATCTTGGAGGCCATC
LOC_Os03g26100
OsAffx.13041.4.S1_x_at--209--2153Chr12:25833399..25833717 (25 bp)
ACAGCATCTTGGAGGCCATCGACTA
NONE
Target Sequence 
GTCCACCTGAGTCCTGCAGATCTTGAGGTCGTGGACTGGTCTGATTTTATTCTTTGTGGTCACTGTTTGCAAGGTCTTCA
GGTCGTAGACAATAGCTACTTCATTACCGAGGACAACGTCGGCATGTTGAAGCTCGCCAAGGAGGCTAACAGCATCTTGG
AGGCCATCGACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13041.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis