Browse Element(s) Details


OsAffx.13057.1.S1_at

Description tigr:9631.m02604
TID=OsAffx.13057.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2651011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26450Os.15764.1.S1_at11/113+15093858..15097099F-actin capping protein beta subunit, putative, expressed
LOC_Os03g26460Os.6724.1.S1_at11/113+15097190..15100288expressed protein
LOC_Os03g26460Os.40390.1.A1_x_at1/113+15097190..15100288expressed protein
LOC_Os03g26470OsAffx.13055.1.S1_at11/113+15100623..15101070hypothetical protein
LOC_Os03g26480OsAffx.13056.1.S1_at11/113+15103183..15105820hypothetical protein
LOC_Os03g26490Os.55461.1.S1_at11/113+15106015..15107011expressed protein
LOC_Os03g26500OsAffx.3335.1.S1_at11/113+15110150..15111064expressed protein
LOC_Os03g26510OsAffx.13057.1.S1_at11/113+15117442..15117708hypothetical protein
LOC_Os03g26520OsAffx.13058.1.S1_at11/113+15125408..15126146hypothetical protein
LOC_Os03g26530Os.7669.1.S1_at11/113+15128709..15130711beta-ketoacyl-CoA synthase family protein, putative, expressed
LOC_Os03g26530OsAffx.13059.1.S1_s_at11/113+15128709..15130711beta-ketoacyl-CoA synthase family protein, putative, expressed
LOC_Os03g26540Os.19099.1.S1_x_at1/113+15134881..15135542retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13057.1.S1_at--748--1831Chr03:15117579..15117603 (25 bp)
ACGACCAACTTTATGCCTTCAAAGA
LOC_Os03g26510
OsAffx.13057.1.S1_at--954--5371Chr03:15117505..15117529 (25 bp)
GAAGAAGCATGCCTGCTTTGACCTA
LOC_Os03g26510
OsAffx.13057.1.S1_at--616--1451Chr03:15117503..15117527 (25 bp)
AGAAGCATGCCTGCTTTGACCTATA
LOC_Os03g26510
OsAffx.13057.1.S1_at--706--2711Chr03:15117501..15117525 (25 bp)
AAGCATGCCTGCTTTGACCTATACC
LOC_Os03g26510
OsAffx.13057.1.S1_at--36--3731Chr03:15117493..15117517 (25 bp)
CTGCTTTGACCTATACCCTACGATT
LOC_Os03g26510
OsAffx.13057.1.S1_at--760--10731Chr03:15117488..15117512 (25 bp)
TTGACCTATACCCTACGATTCTAAG
LOC_Os03g26510
OsAffx.13057.1.S1_at--535--5691Chr03:15117486..15117510 (25 bp)
GACCTATACCCTACGATTCTAAGAC
LOC_Os03g26510
OsAffx.13057.1.S1_at--940--291Chr03:15117481..15117505 (25 bp)
ATACCCTACGATTCTAAGACCGAGT
LOC_Os03g26510
OsAffx.13057.1.S1_at--215--4191Chr03:15117478..15117502 (25 bp)
CCCTACGATTCTAAGACCGAGTCAC
LOC_Os03g26510
OsAffx.13057.1.S1_at--375--1891Chr03:15117474..15117498 (25 bp)
ACGATTCTAAGACCGAGTCACCCAT
LOC_Os03g26510
OsAffx.13057.1.S1_at--119--6571Chr03:15117472..15117496 (25 bp)
GATTCTAAGACCGAGTCACCCATGC
LOC_Os03g26510
Target Sequence 
ACGACCAACTTTATGCCTTCAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GCATGCCTGCTTTGACCTATACCCTACGATTCTAAGACCGAGTCACCCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13057.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis