Browse Element(s) Details


OsAffx.13097.1.S1_s_at

Description tigr:9631.m02807
TID=OsAffx.13097.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5866011/11transposon protein, putative, Mutator sub-class
LOC_Os12g3421011/11Transposable element protein, putative, MuDR
LOC_Os04g0504011/11Transposable element protein, putative, MuDR
LOC_Os01g5113011/11transposon protein, putative, Mutator sub-class
LOC_Os07g0760011/11hypothetical protein
LOC_Os05g0731011/11transposon protein, putative, Mutator sub-class
LOC_Os05g3854011/11transposon protein, putative, Mutator sub-class
LOC_Os07g3291011/11transposon protein, putative, Mutator sub-class
LOC_Os12g0316011/11hypothetical protein
LOC_Os11g3176011/11transposon protein, putative, Mutator sub-class
LOC_Os11g3120011/11retrotransposon protein, putative, unclassified
LOC_Os04g4127011/11hypothetical protein
LOC_Os02g1524011/11hypothetical protein
LOC_Os08g3671011/11hypothetical protein
LOC_Os07g4511011/11transposon protein, putative, Mutator sub-class
LOC_Os10g3535011/11transposon protein, putative, Mutator sub-class
LOC_Os03g2836011/11hypothetical protein
LOC_Os08g3280011/11transposon protein, putative, Mutator sub-class
LOC_Os11g0396011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g3590011/11transposon protein, putative, unclassified
LOC_Os11g1752011/11hypothetical protein
LOC_Os09g0197011/11hypothetical protein
LOC_Os02g5843011/11transposon protein, putative, Mutator sub-class
LOC_Os03g1865011/11hypothetical protein
LOC_Os08g0536011/11transposon protein, putative, Mutator sub-class
LOC_Os09g3278011/11Transposable element protein, putative, MuDR
LOC_Os03g3853011/11transposon protein, putative, Mutator sub-class
LOC_Os06g223205/11Zinc knuckle family protein
LOC_Os08g324804/11transposon protein, putative, Mutator sub-class
LOC_Os10g429104/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58610Os.34434.1.S1_at11/113+33324069..33326158expressed protein
LOC_Os03g58620Os.5642.1.S1_at10/113+33327025..33330039small multi-drug export protein, putative, expressed
LOC_Os03g58630Os.12826.1.S1_at11/113+33330289..33332513Thioredoxin H-type 5, putative, expressed
LOC_Os03g58640Os.12938.1.S1_at11/113+33333049..33341193FHA domain containing protein, expressed
LOC_Os03g58640Os.49478.1.S1_at1/113+33333049..33341193FHA domain containing protein, expressed
LOC_Os03g58650Os.10983.1.S1_at11/113+33341534..33344372expressed protein
LOC_Os03g58660OsAffx.13097.1.S1_s_at11/113+33348208..33355783transposon protein, putative, Mutator sub-class
LOC_Os03g58660Os.27264.1.A1_at1/113+33348208..33355783transposon protein, putative, Mutator sub-class
LOC_Os03g58670NANA3+33356693..33357151Protease inhibitor/seed storage/LTP family protein
LOC_Os03g58690Os.18604.1.S1_at11/113+33360594..33361872expressed protein
LOC_Os03g58700Os.11600.1.S1_at11/113+33363847..33372006vacuolar protein sorting-associated protein 35 family protein, putative, expressed
LOC_Os03g58710Os.14346.1.S1_at11/113+33372162..33375649riboflavin biosynthesis protein, putative, expressed
LOC_Os03g58720Os.18152.1.S1_at10/113+33376632..33390046RNA recognition motif family protein, expressed
LOC_Os03g58720OsAffx.5632.1.S1_at2/113+33376632..33390046RNA recognition motif family protein, expressed
LOC_Os03g58720OsAffx.5632.1.S1_x_at2/113+33376632..33390046RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13097.1.S1_s_at--252--56130Chr12:20701240..20701264 (25 bp)
GACAATTAGTGTTTTTTGCGAAGCC
LOC_Os12g34210
OsAffx.13097.1.S1_s_at--1092--104330Chr12:20701245..20701269 (25 bp)
TTAGTGTTTTTTGCGAAGCCTACCT
LOC_Os12g34210
OsAffx.13097.1.S1_s_at--99--74130Chr12:20701248..20701272 (25 bp)
GTGTTTTTTGCGAAGCCTACCTTTG
LOC_Os12g34210
OsAffx.13097.1.S1_s_at--16--62730Chr12:20701250..20701274 (25 bp)
GTTTTTTGCGAAGCCTACCTTTGAG
LOC_Os12g34210
OsAffx.13097.1.S1_s_at--699--103930Chr12:20701253..20701277 (25 bp)
TTTTGCGAAGCCTACCTTTGAGGAG
LOC_Os12g34210
OsAffx.13097.1.S1_s_at--306--106930Chr12:20701255..20701279 (25 bp)
TTGCGAAGCCTACCTTTGAGGAGTT
LOC_Os12g34210
OsAffx.13097.1.S1_s_at--805--54131Chr12:20701259..20701283 (25 bp)
GAAGCCTACCTTTGAGGAGTTAATG
LOC_Os12g34210
OsAffx.13097.1.S1_s_at--185--17533Chr12:20701266..20701290 (25 bp)
ACCTTTGAGGAGTTAATGTCTCGCA
LOC_Os12g34210
OsAffx.13097.1.S1_s_at--964--61734Chr12:20701272..20701296 (25 bp)
GAGGAGTTAATGTCTCGCATCAAGC
LOC_Os12g34210
OsAffx.13097.1.S1_s_at--231--60734Chr12:20701275..20701299 (25 bp)
GAGTTAATGTCTCGCATCAAGCATG
LOC_Os12g34210
OsAffx.13097.1.S1_s_at--461--97734Chr12:20701279..20701303 (25 bp)
TAATGTCTCGCATCAAGCATGAATT
LOC_Os12g34210
Target Sequence 
GACAATTAGTGTTTTTTGCGAAGCCTACCTTTGAGGAGTTAATGTCTCGCATCAAGCATGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13097.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis