Browse Element(s) Details


OsAffx.13101.1.S1_at

Description tigr:9631.m02829
TID=OsAffx.13101.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g262007/11hypothetical protein
LOC_Os03g290357/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26160OsAffx.18924.2.S1_x_at3/117+15038690..15039772hypothetical protein
LOC_Os07g26160OsAffx.19842.1.S1_at2/117+15038690..15039772hypothetical protein
LOC_Os07g26160OsAffx.18924.3.S1_at2/117+15038690..15039772hypothetical protein
LOC_Os07g26170OsAffx.16418.1.S1_at11/117+15047109..15048752Legume lectins alpha domain containing protein
LOC_Os07g26180OsAffx.28596.1.S1_at11/117+15053760..15055388lectin protein kinase family protein, putative
LOC_Os07g26190OsAffx.29302.1.S1_at11/117+15058180..15060974hypothetical protein
LOC_Os07g26200OsAffx.13101.1.S1_at7/117+15061632..15062434hypothetical protein
LOC_Os07g26210Os.27796.1.A1_at8/117+15067969..15075744hypothetical protein
LOC_Os07g26220OsAffx.20329.1.S1_at4/117+15083235..15087638retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13101.1.S1_at--773--8351Chr03:16450784..16450808 (25 bp)
GGCGGTGCAGTAATTTCAGAATGGA
NONE
OsAffx.13101.1.S1_at--365--191Chr03:16450772..16450796 (25 bp)
ATTTCAGAATGGAACCGTGATGACC
NONE
OsAffx.13101.1.S1_at--1162--8173Chr08:13134385..13134409 (25 bp)
GGAACCGTGATGACCACAACAGACA
NONE
OsAffx.13101.1.S1_at--655--2191Chr03:16450665..16450771 (25 bp)
ACAACAGACAAGTGGTGAAGACGAT
NONE
OsAffx.13101.1.S1_at--253--10872Chr07:15062371..15062395 (25 bp)
TTGGAGATTACCGACCGCAGCGACA
LOC_Os07g26200
OsAffx.13101.1.S1_at--773--4213Chr04:5681613..5681637 (25 bp)
CCGACCGCAGCGACATTCATAGGAA
NONE
OsAffx.13101.1.S1_at--1131--2074Chr11:8539089..8539111 (23 bp)
ACATTCATAGGAACGTGATGGCGAC
NONE
OsAffx.13101.1.S1_at--948--8873Chr08:13134581..13134605 (25 bp)
TGATGGCGACAATGTGGTTCAGCTC
NONE
OsAffx.13101.1.S1_at--707--5794Chr08:13135172..13135196 (25 bp)
GACGAAGGAGCAGCGTTGGTTCACT
NONE
OsAffx.13101.1.S1_at--1142--10852Chr07:15061725..15061749 (25 bp)
TTGGTTCACTGATGACGGCTGCGAC
LOC_Os07g26200
OsAffx.13101.1.S1_at--146--1914Chr08:13180294..13180318 (25 bp)
ACGTGGTGGCGGAACTCAACATCCT
NONE
Target Sequence 
GGCGGTGCAGTAATTTCAGAATGGAACCGTGATGACCACAACAGACAAGTGGTGAAGACGATGGAAGNGGAGGATAAGAG
CAGCGGTGCTGCTAGGGCNTTGGAGATTACCGACCGCAGCGACATTCATAGGAACGTGATGGCGACAATGTGGTTCAGCT
CNGGTTCCATTGNGACAGCGACCATCNTGNNNGNTTGGNNNNNNTTTGNGNNNNAANNGGGGNTGACGAAGGAGCAGCGT
TGGTTCACTGATGACGGCTGCGACGATGACGACGTGGTGGCGGAACTCAACATCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13101.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis