Browse Element(s) Details


OsAffx.13124.1.S1_at

Description tigr:9631.m02967
TID=OsAffx.13124.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g303205/11hypothetical protein
LOC_Os10g019841/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30264NANA3+17226272..17226922hypothetical protein
LOC_Os03g30270OsAffx.8319.1.S1_x_at2/113+17230612..17232982retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30270Os.12826.1.S1_at1/113+17230612..17232982retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30280OsAffx.13121.1.S1_at11/113+17233535..17234151hypothetical protein
LOC_Os03g30290NANA3+17239325..17242217expressed protein
LOC_Os03g30300Os.24545.2.S1_x_at11/113+17242973..172477726-phosphogluconolactonase family protein, expressed
LOC_Os03g30300Os.24545.2.S1_at10/113+17242973..172477726-phosphogluconolactonase family protein, expressed
LOC_Os03g30320OsAffx.13124.1.S1_at5/113+17251733..17254400hypothetical protein
LOC_Os03g30320OsAffx.31757.1.S1_at1/113+17251733..17254400hypothetical protein
LOC_Os03g30334OsAffx.20513.1.S1_at2/113+17259246..17260856hypothetical protein
LOC_Os03g30350NANA3+17263989..17267383retrotransposon protein, putative, unclassified
LOC_Os03g30360NANA3+17267633..17271770retrotransposon protein, putative, unclassified
LOC_Os03g30370Os.26886.3.S1_x_at8/113+17273764..17277105transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30370Os.26886.1.S1_x_at7/113+17273764..17277105transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g30370OsAffx.16244.1.S1_x_at1/113+17273764..17277105transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13124.1.S1_at--278--4212Chr03:17253784..17253987 (25 bp)
CCCCAAGCAGAGCAAGCGTCATACA
LOC_Os03g30320
OsAffx.13124.1.S1_at--750--7812Chr03:17254027..17254051 (25 bp)
GGTCTCATGATGAGGTTCTCCATAA
LOC_Os03g30320
OsAffx.13124.1.S1_at--582--9771Chr03:17254049..17254073 (25 bp)
TAAGAATTTTGTCTTCCAGCCACCT
LOC_Os03g30320
OsAffx.13124.1.S1_at--666--631Chr03:17254280..17254380 (25 bp)
ATGCTACAAGAATGCCAAGGCGTCC
LOC_Os03g30320
OsAffx.13124.1.S1_at--94--2951Chr03:17254372..17254396 (25 bp)
AAGGCGTCCGCAGAGGCACACATGG
LOC_Os03g30320
OsAffx.13124.1.S1_at--906--931Chr03:17254385..17254409 (25 bp)
AGGCACACATGGTTGAGGCTCACAG
NONE
OsAffx.13124.1.S1_at--676--7891Chr03:17254395..17254419 (25 bp)
GGTTGAGGCTCACAGTACGGCTACT
NONE
OsAffx.13124.1.S1_at--443--7031Chr03:17254463..17254487 (25 bp)
GTACAACAAATGAAGAGGCCGTCAC
NONE
OsAffx.13124.1.S1_at--834--1311Chr03:17254476..17254500 (25 bp)
AGAGGCCGTCACACAGGAGCAGATC
NONE
OsAffx.13124.1.S1_at--895--7071Chr03:17254483..17254507 (25 bp)
GTCACACAGGAGCAGATCTTTGTAG
NONE
OsAffx.13124.1.S1_at--768--5911NONE
GAGCTCAATACTCTGAATCTTGCAA
NONE
Target Sequence 
CCCCAAGCAGAGCAAGCGTCATACAAGGAGTATGATGAGATGATCGACATCATGCAGGTGTCTGGGTCTCATGATGAGGT
TCTCCATAAGAATTTTGTCTTCCAGCCACCTGGCAAGAGTGTTGGTCTTGAAGTCAATGCTAGAAGTTGCAAGGGAGCAC
AGGGAGGCAAGGGCAAGAAGGAAGCCAAGCCAGCTCGCAATGACAAGCCATATGGCCAGCAGGACCAGACATGCTACAAG
AATGCCAAGGCGTCCGCAGAGGCACACATGGTTGAGGCTCACAGTACGGCTACTCCCTCCACCACTACTCCACTTGACGC
CCTTGCAGCTGCAGCAAGTACAACAAATGAAGAGGCCGTCACACAGGAGCAGATCTTTGTAGAGCTCAATACTCTGAATC
TTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13124.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis