Browse Element(s) Details


OsAffx.13138.1.S1_at

Description tigr:9631.m03039
TID=OsAffx.13138.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3100011/11U-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30980OsAffx.31069.2.S1_x_at1/113+17598927..17602595hypothetical protein
LOC_Os03g30990OsAffx.20387.1.S1_x_at2/113+17603551..17609415retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30990OsAffx.10632.1.S1_at1/113+17603551..17609415retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g31000OsAffx.13138.1.S1_at11/113+17614914..17622407U-box domain containing protein
LOC_Os03g31010Os.6212.1.S1_at6/113+17624130..17628685expressed protein
LOC_Os03g31030NANA3+17629392..17629757hypothetical protein
LOC_Os03g31044Os.31614.1.S1_at11/113+17636856..17646749expressed protein
LOC_Os03g31044OsAffx.13139.1.S1_x_at10/113+17636856..17646749expressed protein
LOC_Os03g31044OsAffx.13139.1.S1_at7/113+17636856..17646749expressed protein
LOC_Os03g31044OsAffx.11199.1.S1_x_at1/113+17636856..17646749expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13138.1.S1_at--1110--10231Chr03:17621739..17621763 (25 bp)
TTTGGTGTGATCATCCTACGGCTAT
LOC_Os03g31000
OsAffx.13138.1.S1_at--548--9931Chr03:17621755..17621779 (25 bp)
TACGGCTATTGACCGGGATGGCACC
LOC_Os03g31000
OsAffx.13138.1.S1_at--40--8011Chr03:17621770..17621794 (25 bp)
GGATGGCACCGTTGAATCTGTCCAA
LOC_Os03g31000
OsAffx.13138.1.S1_at--101--3891Chr03:17621887..17621911 (25 bp)
CTGTCCTTGGTGTTAGATGCGCTGA
LOC_Os03g31000
OsAffx.13138.1.S1_at--1014--2231Chr03:17621925..17621949 (25 bp)
AAACGGCCCGATCTCTTGAACGATG
LOC_Os03g31000
OsAffx.13138.1.S1_at--126--891Chr03:17621964..17621988 (25 bp)
AGGCCACTGATGAGGAAGCCCTCTT
LOC_Os03g31000
OsAffx.13138.1.S1_at--273--3372Chr04:468959..469172 (25 bp)
CACCGGCATCACCAGAAGTTTGTAT
NONE
OsAffx.13138.1.S1_at--584--2831Chr03:17622019..17622043 (25 bp)
AAGTTTGTATCCCTGCTCCTTTCAT
LOC_Os03g31000
OsAffx.13138.1.S1_at--190--9611Chr03:17622040..17622060 (21 bp)
TCATCTGTCCGATCCTCATGGAGAT
LOC_Os03g31000
OsAffx.13138.1.S1_at--527--571Chr03:17622202..17622226 (25 bp)
ATCCTCAAGTCGCATCTGATGGGTT
LOC_Os03g31000
OsAffx.13138.1.S1_at--945--4331Chr03:17622347..17622371 (25 bp)
CCATGAGTATCTTCGGCAGCAGAAA
LOC_Os03g31000
Target Sequence 
TTTGGTGTGATCATCCTACGGCTATTGACCGGGATGGCACCGTTGAATCTGTCCAAGAAAGTTGCAGCGGAATTGGAGAG
TGATAACCTGCACAGGCTGATCGATAAATCTGCTGGAGACTGGCCTTACAAGGAGGCCAAACAGCTGGCTGTCCTTGGTG
TTAGATGCGCTGAAATGGCAAGGGAGAAACGGCCCGATCTCTTGAACGATGTGTGGAGAGTCGTCAGGCCACTGATGAGG
AAGCCCTCTTCTTGCCCGTACTTTCCACCGGCATCACCAGAAGTTTGTATCCCTGCTCCTTTCATCTGTCCGATCCTCAT
GGAGATCATGAAAGATCCTCAAGTCGCATCTGATGGGTTCACCTATGAAGGAGAGGCCATAAGGAGGTGGTTTGATAGCG
GGAATAATAGGTCTCCGATGACGAACTTGGTCCTTCCCGATCTCAAACTCATCCCTAATCGTGTCCTCCGTTCTTCCATC
CATGAGTATCTTCGGCAGCAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13138.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis