Browse Element(s) Details


OsAffx.13151.1.S1_x_at

Description tigr:9629.m07300
TID=OsAffx.13151.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Aminopeptidase I zinc metalloprotease (M18), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g736809/11Aspartyl aminopeptidase, putative, expressed
LOC_Os03g318707/11hypothetical protein
LOC_Os08g207606/11hypothetical protein
LOC_Os02g326002/11expressed protein
LOC_Os08g324702/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73644Os.7590.1.S1_at10/111+42990380..42993061expressed protein
LOC_Os01g73650OsAffx.24032.1.S1_at11/111+42995161..42998440expressed protein
LOC_Os01g73656Os.32551.2.S1_at11/111+42999869..43004927expressed protein
LOC_Os01g73662Os.32551.1.S1_at11/111+43006089..43007394expressed protein
LOC_Os01g73670Os.8761.3.S1_x_at11/111+43011790..43016248expressed protein
LOC_Os01g73670Os.8761.2.S1_at11/111+43011790..43016248expressed protein
LOC_Os01g73670Os.8761.1.S1_s_at10/111+43011790..43016248expressed protein
LOC_Os01g73680Os.27288.2.S1_x_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680Os.27288.2.S1_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680Os.27288.1.S1_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680OsAffx.13151.1.S1_x_at9/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680OsAffx.13151.2.S1_at1/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73690Os.42980.1.S1_at11/111+43022310..43025907pentatricopeptide, putative, expressed
LOC_Os01g73690Os.26995.1.S1_at1/111+43022310..43025907pentatricopeptide, putative, expressed
LOC_Os01g73700Os.42977.2.S1_x_at2/111+43027029..43028099transposon protein, putative, unclassified
LOC_Os01g73710Os.42977.2.S1_x_at11/111+43031130..43032223transposon protein, putative, unclassified
LOC_Os01g73720Os.42977.1.S1_at11/111+43033372..43034829transposon protein, putative, unclassified, expressed
LOC_Os01g73720Os.42977.2.S1_x_at4/111+43033372..43034829transposon protein, putative, unclassified, expressed
LOC_Os01g73730Os.42975.1.S1_x_at8/111+43037666..43038849Root cap family protein, expressed
LOC_Os01g73730Os.42975.1.S1_at5/111+43037666..43038849Root cap family protein, expressed
LOC_Os01g73740OsAffx.27387.1.S1_at5/111+43040151..43040659lipase class 3 family protein, putative
LOC_Os01g73750OsAffx.11843.1.S1_at11/111+43042572..43048410Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005773cellular_componentvacuole
GO:0042576molecular_functionaspartyl aminopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13151.1.S1_x_at--1132--1571NONE
AGCTCTCAATGCACAGCCCAGCAAG
NONE
OsAffx.13151.1.S1_x_at--504--3012Chr10:22808916..22809374 (25 bp)
AATGCACAGCCCAGCAAGCCTTCTG
NONE
OsAffx.13151.1.S1_x_at--194--1014Chr08:12458611..12458635 (25 bp)
AGGTTGGACTTAGCCGGCTCGGCCA
LOC_Os08g20760
OsAffx.13151.1.S1_x_at--471--106150Chr11:17833171..17833195 (25 bp)
TTCTGGATGGCTTGCGGGCTGGGAC
NONE
OsAffx.13151.1.S1_x_at--605--4134Chr08:12458611..12458630 (20 bp)
CGCTGAGGTTGGACTTAGCCGGCTC
LOC_Os08g20760
OsAffx.13151.1.S1_x_at--865--26556Chr11:18126752..18126776 (25 bp)
AAGCCTTCTGGATGGCTTGCGGGCT
NONE
OsAffx.13151.1.S1_x_at--355--8473Chr08:12458573..12458625 (25 bp)
TGGCCCTGGGCACCTGGACTTAGCC
LOC_Os08g20760
OsAffx.13151.1.S1_x_at--1155--8233Chr08:12458581..12458633 (25 bp)
GGCACCTGGACTTAGCCGGCTCGGC
LOC_Os08g20760
OsAffx.13151.1.S1_x_at--630--1693Chr01:43020992..43021016 (25 bp)
ACCAAGGCACCTGGCGCTGAGGTTG
LOC_Os01g73680
OsAffx.13151.1.S1_x_at--193--1011Chr01:43021011..43021035 (25 bp)
AGGTTGGACTTAGACGGCTCGGCCA
LOC_Os01g73680
OsAffx.13151.1.S1_x_at--515--5911Chr01:43021074..43021098 (25 bp)
GAGCTCAGCGCCAAGGCATTTGGCG
LOC_Os01g73680
Target Sequence 
AGCTCTCAATGCACAGCCCAGCAAGCCTTCTGGATGGCTTGCGGGCTGGGACGTCAGCGCCAGCCATAATGGCGCTGGCC
CTGGGCACATCAGCGCCAGGGCACCTGGCGCTGAGGTTGGACTTAGCCGGCTCGGCCATGGCCCAGCCCAGCAAGCCTTC
TGGATGGCTTGCGGGCTGGGACGTCAGCGCCAGCCATAATGGCGCTGGCCCTGGGCACATCAGCGCCAGGGCGCTGAGGT
TGGACTTAGCCGGCTCAGCCATGGCCCAGCCCAGCAAGCCTTCTGGATGGCTTGCGGGCTGGGATGTCAGCACTAGCCAT
AATGGCGCTGGCCCTGGGCACCTGGACTTAGCCGGCTCGGCCATGGCCCAGCCCAGCAAACCTTCTGGATGGCTTGTGGG
CTGGGATGTCAGCGCCAGCCATAATGGCGCTAGCCCTGGGCACCTCAGCACCAAGGCACCTGGCGCTGAGGTTGGACTTA
GACGGCTCGGCCATGGCCCAGCCCAGCAAGCCTTCTGGATGGTTGGGCTGGGAGCTCAGCGCCAAGGCATTTGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13151.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis