Browse Element(s) Details


OsAffx.13192.1.S1_x_at

Description tigr:9631.m03431
TID=OsAffx.13192.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g037692/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03750OsAffx.25854.1.S1_at11/114+1646743..1662148hypothetical protein
LOC_Os04g03750Os.55335.1.S1_x_at8/114+1646743..1662148hypothetical protein
LOC_Os04g03750OsAffx.27864.4.S1_x_at1/114+1646743..1662148hypothetical protein
LOC_Os04g03760OsAffx.3713.1.S1_at11/114+1663698..1663934hypothetical protein
LOC_Os04g03769Os.53120.1.A1_at2/114+1667493..1667853NA
LOC_Os04g03769OsAffx.13192.1.S1_x_at2/114+1667493..1667853NA
LOC_Os04g03780NANA4+1675821..1676621retrotransposon protein, putative, unclassified
LOC_Os04g03790NANA4+1677240..1683394retrotransposon protein, putative, unclassified
LOC_Os04g03796Os.49328.1.S1_at11/114+1689101..1690041Subtilisin serine protease, putative, expressed
LOC_Os04g03802Os.7278.2.S1_at11/114+1692519..1697608PA domain containing protein, expressed
LOC_Os04g03802Os.7278.1.S1_x_at11/114+1692519..1697608PA domain containing protein, expressed
LOC_Os04g03802Os.7278.1.S1_at11/114+1692519..1697608PA domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13192.1.S1_x_at--157--3171Chr03:19859564..19859588 (25 bp)
AATTGGAAGCGCTCGGGACGCCATG
NONE
OsAffx.13192.1.S1_x_at--121--4431Chr03:19859545..19859569 (25 bp)
GCCATGCATGCGTCGATGCGTCAAG
NONE
OsAffx.13192.1.S1_x_at--236--4051NONE
CGATGCGTCAAGTAGCTCAACCGGA
NONE
OsAffx.13192.1.S1_x_at--94--10011Chr03:19859279..19859303 (25 bp)
TAGCTCAACCGGATTCGCCTCGAGG
NONE
OsAffx.13192.1.S1_x_at--416--3313Chr04:1667215..1667235 (21 bp)
CACAGCTGCGCGTTGACGACGGTGT
NONE
OsAffx.13192.1.S1_x_at--192--1451Chr03:19858907..19858931 (25 bp)
AGAAGCTGCCACGATGTTGGAACGT
NONE
OsAffx.13192.1.S1_x_at--117--6613Chr04:1667551..1667570 (20 bp)
GTTGGAACGTGTCGGTATTTCTCTC
LOC_Os04g03769
OsAffx.13192.1.S1_x_at--806--8713Chr04:1667555..1667764 (25 bp)
TGTCGGTATTTCTCTCTATGTTCAA
LOC_Os04g03769
OsAffx.13192.1.S1_x_at--214--9551NONE
TCTATGTTCAAGAGGCGCGATGCGC
NONE
OsAffx.13192.1.S1_x_at--552--3011Chr03:19856924..19856948 (25 bp)
AATGCACGGTGGCACCGATCTCTTG
NONE
OsAffx.13192.1.S1_x_at--129--4711Chr03:19856853..19856877 (25 bp)
GCGGCGCGTGCCTCAAATCAATGGG
NONE
Target Sequence 
AATTGGAAGCGCTCGGGACGCCATGCATGCGTCGATGCGTCAAGTAGCTCAACCGGATTCGCCTCGAGGCGACGGGAACA
GCGGCGCGAACCCACAGCTGCGCGTTGACGACGGTGTGGCCGCGCTCCAGAGCTACCGTGGCGAGGGTGGACTACAGAGT
GAGGAGGGATGGGTGGGGAAGCTAGAGAGCAAGGGGGTGAAGAAGGAGAAGCTGCCACGATGTTGGAACGTGTCGGTATT
TCTCTCTATGTTCAAGAGGCGCGATGCGCGCAGCCAACGCGGCCGGCCCGAGCCGGGACGGCTCAGCCATGGCGGGGCAG
CGGCGGTGGCACATCGCCGGGGTTCACTGCCAACGGCGACGACGCACAGCGGCATCCTGGCGCACGGCGCGGCAATGCAC
GGTGGCACCGATCTCTTGGGGAGCTCGGCGGTGGCGCAATGGCGACTGGGCCGGCACGGATACAGCGGCGCGTGCCTCAA
ATCAATGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13192.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis