Browse Element(s) Details


OsAffx.13199.1.S1_x_at

Description tigr:9631.m03493
TID=OsAffx.13199.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3650011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36439Os.13384.1.S1_at10/113+20142655..20149628F-box domain containing protein, expressed
LOC_Os03g36460OsAffx.25383.1.S1_at11/113+20150230..20150748hypothetical protein
LOC_Os03g36470OsAffx.20440.1.S1_x_at1/113+20156250..20159180retrotransposon protein, putative, unclassified
LOC_Os03g36470OsAffx.20440.2.S1_x_at1/113+20156250..20159180retrotransposon protein, putative, unclassified
LOC_Os03g36470OsAffx.8244.1.S1_at1/113+20156250..20159180retrotransposon protein, putative, unclassified
LOC_Os03g36470OsAffx.20628.1.S1_at1/113+20156250..20159180retrotransposon protein, putative, unclassified
LOC_Os03g36480NANA3+20159535..20161578retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36490Os.51689.1.S1_at11/113+20164598..20166450retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g36500OsAffx.13199.1.S1_x_at11/113+20171316..20172853hypothetical protein
LOC_Os03g36500OsAffx.20098.1.S1_at1/113+20171316..20172853hypothetical protein
LOC_Os03g36520OsAffx.13200.2.S1_x_at1/113+20176144..20177246hypothetical protein
LOC_Os03g36530Os.56169.1.S1_at11/113+20194998..20198600FAD-binding domain-containing protein, putative, expressed
LOC_Os03g36530Os.51655.2.S1_x_at1/113+20194998..20198600FAD-binding domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13199.1.S1_x_at--1105--5791Chr03:20171431..20171455 (25 bp)
GACGCAGGCCTCCAGGCGGAGCGCG
LOC_Os03g36500
OsAffx.13199.1.S1_x_at--81--7551Chr03:20172393..20172417 (25 bp)
GTGGCGGTGGCAACTACAGATTGTT
LOC_Os03g36500
OsAffx.13199.1.S1_x_at--683--3731Chr03:20172406..20172430 (25 bp)
CTACAGATTGTTGGTGGATGCCAAA
LOC_Os03g36500
OsAffx.13199.1.S1_x_at--57--9211Chr03:20172424..20172448 (25 bp)
TGCCAAATCTGTAGCCATGGACCGC
LOC_Os03g36500
OsAffx.13199.1.S1_x_at--290--2271Chr03:20172428..20172452 (25 bp)
AAATCTGTAGCCATGGACCGCCGCT
LOC_Os03g36500
OsAffx.13199.1.S1_x_at--497--3051Chr03:20172429..20172453 (25 bp)
AATCTGTAGCCATGGACCGCCGCTC
LOC_Os03g36500
OsAffx.13199.1.S1_x_at--58--4371Chr03:20172495..20172519 (25 bp)
CCACCGCCAAGGGAGGAGCTGGTCA
LOC_Os03g36500
OsAffx.13199.1.S1_x_at--786--8011Chr03:20172506..20172530 (25 bp)
GGAGGAGCTGGTCACAGGCGCGCAG
LOC_Os03g36500
OsAffx.13199.1.S1_x_at--508--7091Chr03:20172516..20172540 (25 bp)
GTCACAGGCGCGCAGCCGTCGGGAG
LOC_Os03g36500
OsAffx.13199.1.S1_x_at--658--4131Chr03:20172684..20172708 (25 bp)
CGCTCGAAGGCCTCGATGACGTCCT
LOC_Os03g36500
OsAffx.13199.1.S1_x_at--910--9351Chr03:20172687..20172711 (25 bp)
TCGAAGGCCTCGATGACGTCCTCTC
LOC_Os03g36500
Target Sequence 
GACGCAGGCCTCCAGGCGGAGCGCGGCAGAGGAGGGGTGGTGGGCACCCGGCGGGTGGGGAGGAGGCCGGTGGGGGAGGA
GGGAGTCCGGCGGCCGGCGATGGGCGACGAGGTGGCGGTGGCAACTACAGATTGTTGGTGGATGCCAAATCTGTAGCCAT
GGACCGCCGCTCGCCGGTGCTGCACGGCCTCCTGCGCCCACCCTCCCACGCCGCCACCGCCAAGGGAGGAGCTGGTCACA
GGCGCGCAGCCGTCGGGAGCGGGGCGGAGCGGTGCGCGGCTGGGGGAGCACGGCGACAGGGGAGGGCGGGCGGGAGGCCG
TGCGGTCCTCCCACCGCGGAATCCGTCCTCCACACCGCCTCCCGTGACGCCTCCGCCGCGGCGCCCCTCCTCCCAGCGCT
CCCGCTCGAAGGCCTCGATGACGTCCTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13199.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis