Browse Element(s) Details


OsAffx.13227.1.S1_at

Description tigr:9631.m03654
TID=OsAffx.13227.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g251891/11Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25160OsAffx.23386.1.S1_at11/111+14192960..14193587Jacalin-like lectin domain containing protein
LOC_Os01g25170OsAffx.23387.1.S1_at11/111+14203265..14203860hypothetical protein
LOC_Os01g25189OsAffx.21107.1.S1_at11/111+14207395..14216126Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os01g25189Os.26848.1.S1_at11/111+14207395..14216126Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os01g25189OsAffx.13227.1.S1_at1/111+14207395..14216126Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os01g25189Os.55138.1.S1_x_at1/111+14207395..14216126Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os01g25210NANA1+14227658..14228593retrotransposon, putative, centromere-specific
LOC_Os01g25220OsAffx.11199.1.S1_x_at11/111+14230490..14230776hypothetical protein
LOC_Os01g25230OsAffx.2080.1.S1_at11/111+14232696..14234440hypothetical protein
LOC_Os01g25230Os.41248.2.A1_at6/111+14232696..14234440hypothetical protein
LOC_Os01g25230Os.41248.5.S1_x_at3/111+14232696..14234440hypothetical protein
LOC_Os01g25240OsAffx.8871.1.S1_at10/111+14235410..14239865expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009826biological_processunidimensional cell growth
GO:0016126biological_processsterol biosynthesis
GO:0016132biological_processbrassinosteroid biosynthesis
GO:0030176cellular_componentintegral to endoplasmic reticulum membrane
GO:0009918molecular_functionsterol delta7 reductase activity
GO:0050613molecular_functiondelta14-sterol reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13227.1.S1_at--557--6311NONE
GATGCACGGCCCTCTGGTTGATGTT
NONE
OsAffx.13227.1.S1_at--973--9411Chr03:21100974..21100998 (25 bp)
TCGTGCCGAGCGCAGACACCTAATA
NONE
OsAffx.13227.1.S1_at--671--5631Chr03:21100988..21101012 (25 bp)
GACACCTAATAGCACATCTTGAACG
NONE
OsAffx.13227.1.S1_at--48--431Chr03:21101003..21101027 (25 bp)
ATCTTGAACGGTTTCACGGGCGGCA
NONE
OsAffx.13227.1.S1_at--938--251Chr03:21101039..21101063 (25 bp)
ATAGGCACCGCCTTGAGGTTAACGG
NONE
OsAffx.13227.1.S1_at--496--471Chr03:21101147..21101171 (25 bp)
ATCTCCACGGGCAGCGCTGCAAGGA
NONE
OsAffx.13227.1.S1_at--595--3211Chr03:21101166..21101190 (25 bp)
CAAGGAGCTGGAATGGTCCGCAGAT
NONE
OsAffx.13227.1.S1_at--329--5291Chr03:21101176..21101200 (25 bp)
GAATGGTCCGCAGATGGCCACGCCA
NONE
OsAffx.13227.1.S1_at--187--1153Chr03:21101229..21101253 (25 bp)
AGTCGGGATAACGTGGTGCGCTATC
NONE
OsAffx.13227.1.S1_at--1111--2571Chr03:21101238..21101262 (25 bp)
AACGTGGTGCGCTATCGGGAGCATT
NONE
OsAffx.13227.1.S1_at--470--4872Chr12:27007335..27007387 (24 bp)
GCTATCGGGAGCATTCTCGGCAATT
NONE
Target Sequence 
GATGCACGGCCCTCTGGTTGATGTTCGCCACGGCGAAGCCGAGCCGCGTCGTGCCGAGCGCAGACACCTAATAGCACATC
TTGAACGGTTTCACGGGCGGCACGCGGGATGGGATAGGCACCGCCTTGAGGTTAACGGCGATGCTGGTGACGCGGAGGTA
ATAGGCGCCATTCCTGGGGTTCTTGAGGAGGGGCACGGGGTTGCAGCGGAGACCTTCGGCGATCTCCACGGGCAGCGCTG
CAAGGAGCTGGAATGGTCCGCAGATGGCCACGCCATCGCCGCCGCCGCTAGCCGGTGGGGTCTAGTCGGGATAACGTGGT
GCGCTATCGGGAGCATTCTCGGCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13227.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis