Browse Element(s) Details


OsAffx.13287.1.S1_at

Description tigr:9631.m03990
TID=OsAffx.13287.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4150011/11hypothetical protein
LOC_Os03g316601/11Transposable element protein, putative, MuDR
LOC_Os01g234201/11Transposable element protein, putative, MuDR
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41438Os.11903.1.S1_at11/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438OsAffx.28164.2.S1_at2/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438OsAffx.3473.1.S1_x_at1/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438OsAffx.10096.1.S1_x_at1/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41438Os.52574.2.S1_x_at1/113+23009191..23022774Protein Z, putative, expressed
LOC_Os03g41460Os.49745.1.S1_at11/113+23023354..23025747Serine/threonine-protein kinase SAPK9, putative, expressed
LOC_Os03g41470OsAffx.13285.1.S1_at10/113+23026905..23029543hypothetical protein
LOC_Os03g41470OsAffx.24902.1.S1_s_at1/113+23026905..23029543hypothetical protein
LOC_Os03g41480OsAffx.13286.1.S1_at11/113+23032440..23034859hypothetical protein
LOC_Os03g41480Os.45173.1.S1_x_at3/113+23032440..23034859hypothetical protein
LOC_Os03g41480OsAffx.11899.1.S1_at1/113+23032440..23034859hypothetical protein
LOC_Os03g41480OsAffx.25327.1.S1_at1/113+23032440..23034859hypothetical protein
LOC_Os03g41500OsAffx.13287.1.S1_at11/113+23037306..23037572hypothetical protein
LOC_Os03g41510Os.11464.1.S1_at11/113+23040880..23044899oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os03g41530Os.49515.2.S1_x_at11/113+23047775..23050994Single-strand binding protein family protein, expressed
LOC_Os03g41540OsAffx.10665.1.S1_x_at9/113+23055080..23056298hypothetical protein
LOC_Os03g41540Os.55476.1.S1_at1/113+23055080..23056298hypothetical protein
LOC_Os03g41540Os.55138.1.S1_x_at1/113+23055080..23056298hypothetical protein
LOC_Os03g41540OsAffx.10665.2.S1_at1/113+23055080..23056298hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13287.1.S1_at--1135--1072Chr03:18034774..18034793 (20 bp)
AGGGCTCGACCAAACAGTTCGTTTG
LOC_Os03g31660
OsAffx.13287.1.S1_at--182--2371Chr03:23037507..23037531 (25 bp)
AAACAGTTCGTTTGGTCAGTTCAAT
LOC_Os03g41500
OsAffx.13287.1.S1_at--921--4011Chr03:23037499..23037523 (25 bp)
CGTTTGGTCAGTTCAATATGCAGGG
LOC_Os03g41500
OsAffx.13287.1.S1_at--866--4992Chr01:13139573..13139596 (24 bp)
GCATGTGCTCAATCGAGTGCATTTA
LOC_Os01g23420
OsAffx.13287.1.S1_at--318--1131Chr03:23037455..23037479 (25 bp)
AGTGCATTTAATGTGGAAGTCTCCC
LOC_Os03g41500
OsAffx.13287.1.S1_at--1094--8191Chr03:23037441..23037465 (25 bp)
GGAAGTCTCCCAGCATAATGAGGAC
LOC_Os03g41500
OsAffx.13287.1.S1_at--134--711Chr03:23037424..23037448 (25 bp)
ATGAGGACAATATCGGCATTGACAT
LOC_Os03g41500
OsAffx.13287.1.S1_at--173--3951Chr03:23037411..23037435 (25 bp)
CGGCATTGACATGCAGAGCCTGCAT
LOC_Os03g41500
OsAffx.13287.1.S1_at--1055--5491Chr03:23037374..23037398 (25 bp)
GAACAAACAGAATTGCCGAGCACGG
LOC_Os03g41500
OsAffx.13287.1.S1_at--946--4071Chr03:23037358..23037382 (25 bp)
CGAGCACGGTGCAACAACATGCGAT
LOC_Os03g41500
OsAffx.13287.1.S1_at--138--2211Chr03:23037345..23037369 (25 bp)
ACAACATGCGATGGGTGAAGCCGAT
LOC_Os03g41500
Target Sequence 
AGGGCTCGACCAAACAGTTCGTTTGGTCAGTTCAATATGCAGGGAGATGCATGTGCTCAATCGAGTGCATTTAATGTGGA
AGTCTCCCAGCATAATGAGGACAATATCGGCATTGACATGCAGAGCCTGCATATCGAACAAGTTGAACAAACAGAATTGC
CGAGCACGGTGCAACAACATGCGATGGGTGAAGCCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13287.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis