Browse Element(s) Details


OsAffx.13315.1.S1_at

Description tigr:9631.m04144
TID=OsAffx.13315.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4305011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43010Os.49538.1.S1_at10/113+23943442..23951796H1flk, putative, expressed
LOC_Os03g43020Os.18497.1.S1_at11/113+23953206..23957468prefoldin subunit 4, putative, expressed
LOC_Os03g43030NANA3+23963520..23964414hypothetical protein
LOC_Os03g43040NANA3+23964668..23968115retrotransposon protein, putative, unclassified
LOC_Os03g43050OsAffx.13315.1.S1_at11/113+23969083..23970205hypothetical protein
LOC_Os03g43060OsAffx.13387.2.S1_at11/113+23972905..23977702F-box domain containing protein
LOC_Os03g43060OsAffx.13387.3.S1_x_at1/113+23972905..23977702F-box domain containing protein
LOC_Os03g43070OsAffx.25507.1.S1_at11/113+23982556..23985394hypothetical protein
LOC_Os03g43080OsAffx.13317.1.S1_at11/113+23989932..23990602hypothetical protein
LOC_Os03g43090Os.14491.2.S1_x_at3/113+23991129..23998375transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g43090Os.47463.1.S1_x_at3/113+23991129..23998375transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13315.1.S1_at--174--7111Chr03:23969672..23969696 (25 bp)
GTCACCAATGGAGTCTTTGAGCCAA
LOC_Os03g43050
OsAffx.13315.1.S1_at--52--5651Chr03:23969606..23969630 (25 bp)
GACAGCCTTGCCAACGACATGTTGA
LOC_Os03g43050
OsAffx.13315.1.S1_at--1081--8891Chr03:23969584..23969608 (25 bp)
TGAGCTTTTGCATCAACCAGTCGTT
LOC_Os03g43050
OsAffx.13315.1.S1_at--620--1151Chr03:23969523..23969547 (25 bp)
AGTCGACCTATCTAGCTGCTTATGC
LOC_Os03g43050
OsAffx.13315.1.S1_at--760--811Chr03:23969498..23969522 (25 bp)
ATGGTCGCATCACGATCCAGTTTGA
LOC_Os03g43050
OsAffx.13315.1.S1_at--730--10751Chr03:23969477..23969501 (25 bp)
TTGAGGAATTCCTCTCTTTCCGCTT
LOC_Os03g43050
OsAffx.13315.1.S1_at--741--6011Chr03:23969400..23969424 (25 bp)
GAGAGACGCTGCTGCATGCTACGGA
LOC_Os03g43050
OsAffx.13315.1.S1_at--352--3851Chr03:23969246..23969266 (21 bp)
CTGAAGATCCAAGGCGTGTTCCCGT
LOC_Os03g43050
OsAffx.13315.1.S1_at--89--5711Chr03:23969203..23969227 (25 bp)
GACTACCATCATCACCCGGGAGAGG
LOC_Os03g43050
OsAffx.13315.1.S1_at--1095--6171Chr03:23969154..23969178 (25 bp)
GAGGAGCACTTTGCATCTTTCGACC
LOC_Os03g43050
OsAffx.13315.1.S1_at--58--10311Chr03:23969137..23969161 (25 bp)
TTTCGACCGATTTATCTTGAGCGTG
LOC_Os03g43050
Target Sequence 
GTCACCAATGGAGTCTTTGAGCCAACGGAGGGAGAGGCTCCAGATCAGGATCATCCCTGCGATGCCGACAGCCTTGCCAA
CGACATGTTGAGCTTTTGCATCAACCAGTCGTTCCCTCCCCCCAACTGTTGTCAGGCCGTCACGGTCACAGTCGACCTAT
CTAGCTGCTTATGCATGGTCGCATCACGATCCAGTTTGAGGAATTCCTCTCTTTCCGCTTTTACCATCCTTGCCCTCTAT
GCAAACTGTGGGGGTTTACGCGCCGTACGGGAGAGAGACGCTGCTGCATGCTACGGAGCTGGTGATGCACCTGAAGATCC
AAGGCGTGTTCCCGTCACCATTCCAGCCTCTCCGACTACCATCATCACCCGGGAGAGGCCACCTGCAATGGAGATGTCGG
TCGAGGAGCACTTTGCATCTTTCGACCGATTTATCTTGAGCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13315.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis