Browse Element(s) Details


OsAffx.13375.1.S1_at

Description tigr:9631.m04461
TID=OsAffx.13375.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4603011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45980Os.53437.1.S1_at11/113+25946335..25949128expressed protein
LOC_Os03g45990Os.25461.1.S1_at8/113+25957751..25958560ferric leghemoglobin reductase, putative
LOC_Os03g45990Os.24884.1.A1_s_at3/113+25957751..25958560ferric leghemoglobin reductase, putative
LOC_Os03g45990OsAffx.26764.1.S1_x_at1/113+25957751..25958560ferric leghemoglobin reductase, putative
LOC_Os03g46010OsAffx.3529.1.S1_at10/113+25963128..25964241hypothetical protein
LOC_Os03g46030OsAffx.13375.1.S1_at11/113+25970129..25970551hypothetical protein
LOC_Os03g46040Os.49439.1.S1_at11/113+25972952..25977048expressed protein
LOC_Os03g46046NANA3+25981759..25982339hypothetical protein
LOC_Os03g46052NANA3+25983378..25983992hypothetical protein
LOC_Os03g46060Os.12761.1.S1_at11/113+25987087..25987939P21 protein, putative, expressed
LOC_Os03g46070Os.459.1.S1_at10/113+25988565..25989483P21 protein, putative, expressed
LOC_Os03g46070Os.6867.1.S1_x_at1/113+25988565..25989483P21 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13375.1.S1_at--946--1271Chr03:25970203..25970227 (25 bp)
AGATCTGGCGGTACGGGACGACCTC
LOC_Os03g46030
OsAffx.13375.1.S1_at--720--8111Chr03:25970218..25970242 (25 bp)
GGACGACCTCAGAACGGCTGCCGAG
LOC_Os03g46030
OsAffx.13375.1.S1_at--650--2131Chr03:25970322..25970346 (25 bp)
ACAGTGCTGTTTCCATCCTCACACG
LOC_Os03g46030
OsAffx.13375.1.S1_at--765--5431Chr03:25970365..25970389 (25 bp)
GAACCGGTGGCCTTCTTTGGACACA
LOC_Os03g46030
OsAffx.13375.1.S1_at--534--10231Chr03:25970380..25970404 (25 bp)
TTTGGACACAAGAACCTCATTTCGG
LOC_Os03g46030
OsAffx.13375.1.S1_at--456--2631Chr03:25970392..25970416 (25 bp)
AACCTCATTTCGGTGGGCCCAGATG
LOC_Os03g46030
OsAffx.13375.1.S1_at--589--2311Chr03:25970418..25970442 (25 bp)
AAAGGTGGCATGTGCCCTTAAGCTT
LOC_Os03g46030
OsAffx.13375.1.S1_at--902--7291Chr03:25970429..25970453 (25 bp)
GTGCCCTTAAGCTTTGCCTATGTGG
LOC_Os03g46030
OsAffx.13375.1.S1_at--23--2791Chr03:25970460..25970484 (25 bp)
AAGAGAGAATGCCACCTCACCGCAC
LOC_Os03g46030
OsAffx.13375.1.S1_at--1078--9671Chr03:25970476..25970500 (25 bp)
TCACCGCACTGTGAAGGCCCTAAGT
LOC_Os03g46030
OsAffx.13375.1.S1_at--239--11Chr03:25970491..25970515 (25 bp)
GGCCCTAAGTCGCAACGGGTGTTAT
LOC_Os03g46030
Target Sequence 
AGATCTGGCGGTACGGGACGACCTCAGAACGGCTGCCGAGCTCCGGGTGGTGCGGCGGCGACACGCCCTGCCTGTCCCCC
ACGACCGCCGGCGCCGCTCACTCCGATGCCACTTGCTCCACAGTGCTGTTTCCATCCTCACACGCCCTACTTTTTCTCCC
AAGAACCGGTGGCCTTCTTTGGACACAAGAACCTCATTTCGGTGGGCCCAGATGCAAAGGTGGCATGTGCCCTTAAGCTT
TGCCTATGTGGGATGGCAAGAGAGAATGCCACCTCACCGCACTGTGAAGGCCCTAAGTCGCAACGGGTGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13375.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis