Browse Element(s) Details


OsAffx.13451.1.S1_at

Description tigr:9631.m04976
TID=OsAffx.13451.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative ZF-HD homeobox protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5092011/11ZF-HD protein dimerisation region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50870Os.16884.1.S1_at10/113+29014165..29016831expressed protein
LOC_Os03g50880Os.11814.1.S1_at9/113+29016928..29020662Anthranilate synthase component II, putative, expressed
LOC_Os03g50890Os.3420.1.S1_at11/113+29024020..29026439Actin-1, putative, expressed
LOC_Os03g50890Os.3420.1.S1_s_at11/113+29024020..29026439Actin-1, putative, expressed
LOC_Os03g50900Os.51810.1.S1_at11/113+29027553..29030470transposon protein, putative, unclassified, expressed
LOC_Os03g50900Os.19803.2.S1_at1/113+29027553..29030470transposon protein, putative, unclassified, expressed
LOC_Os03g50920OsAffx.13451.1.S1_at11/113+29041184..29041900ZF-HD protein dimerisation region containing protein, expressed
LOC_Os03g50920OsAffx.13451.1.S1_x_at11/113+29041184..29041900ZF-HD protein dimerisation region containing protein, expressed
LOC_Os03g50940Os.24044.1.S1_at9/113+29051234..29054086Cytochrome c oxidase assembly protein ctaG, putative, expressed
LOC_Os03g50960OsAffx.3569.1.S1_at11/113+29060906..29061504Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g50960OsAffx.3569.1.S1_x_at11/113+29060906..29061504Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g50970Os.12990.1.S1_x_at11/113+29065222..29070465retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13451.1.S1_at--283--4671Chr03:29041449..29041473 (25 bp)
GCGGGCCGCCGGGATACATGCACAT
LOC_Os03g50920
OsAffx.13451.1.S1_at--426--8411Chr03:29041452..29041476 (25 bp)
GGCCGCCGGGATACATGCACATGGC
LOC_Os03g50920
OsAffx.13451.1.S1_at--431--3971Chr03:29041458..29041482 (25 bp)
CGGGATACATGCACATGGCGGCGAT
LOC_Os03g50920
OsAffx.13451.1.S1_at--179--4651Chr03:29041603..29041627 (25 bp)
GCTCGGGTGGCGGATGCCGAAGCGG
LOC_Os03g50920
OsAffx.13451.1.S1_at--696--1051Chr03:29041656..29041680 (25 bp)
AGGTGGCGCGCTTCTGCCGGGAGAT
LOC_Os03g50920
OsAffx.13451.1.S1_at--507--8471Chr03:29041659..29041683 (25 bp)
TGGCGCGCTTCTGCCGGGAGATCGG
LOC_Os03g50920
OsAffx.13451.1.S1_at--252--4651Chr03:29041683..29041707 (25 bp)
GCGTCAACCGGCAGGTCTTCAAGGT
LOC_Os03g50920
OsAffx.13451.1.S1_at--210--7091Chr03:29041685..29041709 (25 bp)
GTCAACCGGCAGGTCTTCAAGGTGT
LOC_Os03g50920
OsAffx.13451.1.S1_at--551--9711Chr03:29041686..29041710 (25 bp)
TCAACCGGCAGGTCTTCAAGGTGTG
LOC_Os03g50920
OsAffx.13451.1.S1_at--6--2631Chr03:29041688..29041712 (25 bp)
AACCGGCAGGTCTTCAAGGTGTGGA
LOC_Os03g50920
OsAffx.13451.1.S1_at--986--1771Chr03:29041689..29041713 (25 bp)
ACCGGCAGGTCTTCAAGGTGTGGAT
LOC_Os03g50920
Target Sequence 
GCGGGCCGCCGGGATACATGCACATGGCGGCGATGGGAGGAGCGGTGGGCGGCGGCGGCGGCGTCGACGGCGGCGGCGGC
TCCGGGGGGAGGCGGCGGACGCGGACCAAGTTCACGGAGGAGCAGAAGGCGCGGATGCTGCGGTTCGCGGAGCGGCTCGG
GTGGCGGATGCCGAAGCGGGAGCCCGGCCGCGCGCCCGGGGACGACGAGGTGGCGCGCTTCTGCCGGGAGATCGGCGTCA
ACCGGCAGGTCTTCAAGGTGTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13451.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis