Browse Element(s) Details


OsAffx.13501.1.S1_at

Description tigr:9631.m05479
TID=OsAffx.13501.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5608011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56050OsAffx.25729.1.S1_at11/113+31861000..31866063AP2 domain containing protein, expressed
LOC_Os03g56060Os.10855.1.S1_at11/113+31869482..31873355glycosyl transferase, group 2 family protein, expressed
LOC_Os03g56070Os.11015.1.S1_at9/113+31881522..31884082expressed protein
LOC_Os03g56080OsAffx.13501.1.S1_at11/113+31886081..31886530hypothetical protein
LOC_Os03g56090Os.18725.1.S1_at11/113+31891832..31893491Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g56100OsAffx.13502.1.S1_at11/113+31898552..31901922hypothetical protein
LOC_Os03g56100Os.55223.1.S1_at4/113+31898552..31901922hypothetical protein
LOC_Os03g56110Os.31463.1.S1_at11/113+31903523..31909202KNOX1 domain containing protein, expressed
LOC_Os03g56110Os.57551.1.S1_s_at11/113+31903523..31909202KNOX1 domain containing protein, expressed
LOC_Os03g56110Os.8575.1.S1_at1/113+31903523..31909202KNOX1 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13501.1.S1_at--916--3572Chr03:31886118..31886142 (25 bp)
CATATATAGAGTTTAGGGAGCGGGA
LOC_Os03g56080
OsAffx.13501.1.S1_at--414--9071Chr03:31886143..31886458 (25 bp)
TGCTATTGAGGTTGAAACTGTCCCT
LOC_Os03g56080
OsAffx.13501.1.S1_at--640--10731Chr03:31886445..31886469 (25 bp)
TTGAAACTGTCCCTGTTAGGTGCCA
LOC_Os03g56080
OsAffx.13501.1.S1_at--135--5551Chr03:31886447..31886471 (25 bp)
GAAACTGTCCCTGTTAGGTGCCACG
LOC_Os03g56080
OsAffx.13501.1.S1_at--966--2551Chr03:31886449..31886473 (25 bp)
AACTGTCCCTGTTAGGTGCCACGGT
LOC_Os03g56080
OsAffx.13501.1.S1_at--1130--3871Chr03:31886451..31886475 (25 bp)
CTGTCCCTGTTAGGTGCCACGGTGA
LOC_Os03g56080
OsAffx.13501.1.S1_at--1079--9291Chr03:31886454..31886478 (25 bp)
TCCCTGTTAGGTGCCACGGTGAGAT
LOC_Os03g56080
OsAffx.13501.1.S1_at--573--3871Chr03:31886457..31886481 (25 bp)
CTGTTAGGTGCCACGGTGAGATAAT
LOC_Os03g56080
OsAffx.13501.1.S1_at--157--4411Chr03:31886466..31886490 (25 bp)
GCCACGGTGAGATAATCGGGCCCAT
LOC_Os03g56080
OsAffx.13501.1.S1_at--807--1911Chr03:31886469..31886493 (25 bp)
ACGGTGAGATAATCGGGCCCATGAA
LOC_Os03g56080
OsAffx.13501.1.S1_at--5--6471Chr03:31886476..31886500 (25 bp)
GATAATCGGGCCCATGAAATGTGCA
LOC_Os03g56080
Target Sequence 
CATATATAGAGTTTAGGGAGCGGGATGCTATTGAGGTTGAAACTGTCCCTGTTAGGTGCCACGGTGAGATAATCGGGCCC
ATGAAATGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13501.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis