Browse Element(s) Details


OsAffx.13533.1.S1_at

Description tigr:9631.m05668
TID=OsAffx.13533.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative blue copper-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5774011/11Plastocyanin-like domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57690Os.15575.1.S1_at11/113+32818329..32825391Aldehyde oxidase 1, putative, expressed
LOC_Os03g57720Os.15575.1.S1_at3/113+32836339..32837447aldehyde oxidase-2, putative, expressed
LOC_Os03g57730OsAffx.3634.1.S1_at11/113+32841829..32842334Plastocyanin-like domain containing protein
LOC_Os03g57740OsAffx.13533.1.S1_at11/113+32846035..32846671Plastocyanin-like domain containing protein
LOC_Os03g57750OsAffx.3635.1.S1_s_at11/113+32848914..32849682expressed protein
LOC_Os03g57760OsAffx.25746.1.S1_x_at11/113+32850137..3285409225.3 kDa vesicle transport protein, putative, expressed
LOC_Os03g57770OsAffx.25747.1.S1_at11/113+32858482..32859169expressed protein
LOC_Os03g57780Os.8586.1.S1_at11/113+32864621..32869594leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g57780OsAffx.5056.1.S1_x_at1/113+32864621..32869594leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g57790Os.5502.1.S1_at11/113+32868891..32874441Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os03g57790Os.54270.1.S1_at1/113+32868891..32874441Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13533.1.S1_at--663--8551Chr03:32846536..32846560 (25 bp)
TGGATCCTCGGGTTCGACTACGCCG
LOC_Os03g57740
OsAffx.13533.1.S1_at--607--9431Chr03:32846529..32846553 (25 bp)
TCGGGTTCGACTACGCCGCATGGGC
LOC_Os03g57740
OsAffx.13533.1.S1_at--1113--771Chr03:32846510..32846534 (25 bp)
ATGGGCCGCCACCAAGCAGTTTAGG
LOC_Os03g57740
OsAffx.13533.1.S1_at--1061--4371Chr03:32846499..32846523 (25 bp)
CCAAGCAGTTTAGGGTCGGCGACAC
LOC_Os03g57740
OsAffx.13533.1.S1_at--542--9451Chr03:32846366..32846508 (25 bp)
TCGGCGACACGCTAGTGTTCAGGTA
LOC_Os03g57740
OsAffx.13533.1.S1_at--790--5631Chr03:32846361..32846503 (25 bp)
GACACGCTAGTGTTCAGGTACAAGG
LOC_Os03g57740
OsAffx.13533.1.S1_at--364--6751Chr03:32846350..32846374 (25 bp)
GTTCAGGTACAAGGGCACCAACCAC
LOC_Os03g57740
OsAffx.13533.1.S1_at--218--9851Chr03:32846343..32846367 (25 bp)
TACAAGGGCACCAACCACACGGTGG
LOC_Os03g57740
OsAffx.13533.1.S1_at--32--8411Chr03:32846307..32846331 (25 bp)
GGCGCGGACTTCAAGGCGTGCAACA
LOC_Os03g57740
OsAffx.13533.1.S1_at--235--1951Chr03:32846280..32846304 (25 bp)
ACGGCGAGCGCGAACGAGTGGAGCT
LOC_Os03g57740
OsAffx.13533.1.S1_at--413--3491Chr03:32846221..32846245 (25 bp)
CAGGCGGTGGTTCTTCTGCGGCGTC
LOC_Os03g57740
Target Sequence 
TGGATCCTCGGGTTCGACTACGCCGCATGGGCCGCCACCAAGCAGTTTAGGGTCGGCGACACGCTAGTGTTCAGGTACAA
GGGCACCAACCACACGGTGGTGGAGGTGGGCGGCGCGGACTTCAAGGCGTGCAACAAGACGGCGAGCGCGAACGAGTGGA
GCTCCGGCGAGGATCGCGTCGCGCTCGACAAGGAGGGCAGGCGGTGGTTCTTCTGCGGCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13533.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis