Browse Element(s) Details


OsAffx.13560.1.S1_at

Description tigr:9631.m05948
TID=OsAffx.13560.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6041011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60360Os.16863.1.S1_x_at9/113+34266225..34271658expressed protein
LOC_Os03g60370Os.10845.1.S1_s_at11/113+34273673..34279058histidine acid phosphatase family protein, putative, expressed
LOC_Os03g60380Os.24712.1.A1_s_at11/113+34279221..34282440NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g60380OsAffx.25781.1.S1_at4/113+34279221..34282440NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g60390Os.9436.1.S1_at11/113+34282081..34285669PHD finger protein, putative, expressed
LOC_Os03g60400Os.9075.1.S1_at11/113+34286112..3428834940S ribosomal protein S23, putative, expressed
LOC_Os03g60410OsAffx.13560.1.S1_at11/113+34289399..34289860hypothetical protein
LOC_Os03g60430OsAffx.13602.1.S1_at11/113+34297474..34301012Floral homeotic protein APETALA2, putative, expressed
LOC_Os03g60440OsAffx.3656.1.S1_at5/113+34305773..34306171hypothetical protein
LOC_Os03g60440OsAffx.3656.1.S1_x_at4/113+34305773..34306171hypothetical protein
LOC_Os03g60449NANA3+34310640..34311682hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13560.1.S1_at--985--8351Chr03:34289777..34289801 (25 bp)
GGCGTGGCACGGGACGGAACACCTG
LOC_Os03g60410
OsAffx.13560.1.S1_at--813--3491Chr03:34289732..34289756 (25 bp)
CATGGCTGAGCTCGCTACGGTTCAA
LOC_Os03g60410
OsAffx.13560.1.S1_at--342--1571Chr03:34289724..34289748 (25 bp)
AGCTCGCTACGGTTCAATCCCGTTG
LOC_Os03g60410
OsAffx.13560.1.S1_at--920--7871Chr03:34289714..34289738 (25 bp)
GGTTCAATCCCGTTGGGCTCTCGGG
LOC_Os03g60410
OsAffx.13560.1.S1_at--550--7571Chr03:34289685..34289709 (25 bp)
GGGCTCACGTACTTGCACGGTTGGT
LOC_Os03g60410
OsAffx.13560.1.S1_at--697--4611Chr03:34289610..34289634 (25 bp)
GCGAGCTTCCGCTTGAGGGAGGAGT
LOC_Os03g60410
OsAffx.13560.1.S1_at--260--7651Chr03:34289594..34289618 (25 bp)
GGGAGGAGTTCTAGTGATTCTTGAC
LOC_Os03g60410
OsAffx.13560.1.S1_at--681--9531Chr03:34289585..34289609 (25 bp)
TCTAGTGATTCTTGACGGTGTTGTT
LOC_Os03g60410
OsAffx.13560.1.S1_at--1098--5851Chr03:34289545..34289569 (25 bp)
GAGCCACGTGATGGTGGCCCACCAG
LOC_Os03g60410
OsAffx.13560.1.S1_at--1002--8451Chr03:34289531..34289555 (25 bp)
TGGCCCACCAGTTGCCGAGGCGGTC
LOC_Os03g60410
OsAffx.13560.1.S1_at--699--10691Chr03:34289520..34289544 (25 bp)
TTGCCGAGGCGGTCACCGTCCAATT
LOC_Os03g60410
Target Sequence 
GGCGTGGCACGGGACGGAACACCTGCCCGCCGCTTCCGCAGCTGCCATGGCTGAGCTCGCTACGGTTCAATCCCGTTGGG
CTCTCGGGCCGGGGGCTCACGTACTTGCACGGTTGGTTGATCTCGCCGCCGTCGACGCCGGCGCCGACCTCCATGGTGGT
GGCGGTGGCGAGCTTCCGCTTGAGGGAGGAGTTCTAGTGATTCTTGACGGTGTTGTTGGTGCGGCCGGGGAGGAGCCACG
TGATGGTGGCCCACCAGTTGCCGAGGCGGTCACCGTCCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis