Browse Element(s) Details


OsAffx.13562.1.S1_at

Description tigr:9631.m05962
TID=OsAffx.13562.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative Cys2His2 zinc-finger protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6054011/11Zinc finger, C2H2 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60480Os.8144.1.S1_at11/113+34324835..34327108heavy metal-associated domain containing protein, expressed
LOC_Os03g60500OsAffx.28855.3.S1_x_at5/113+34330365..34332169hypothetical protein
LOC_Os03g60509Os.9929.1.S1_at11/113+34333429..34334598expressed protein
LOC_Os03g60520Os.52542.1.S1_at1/113+34336350..34339211expressed protein
LOC_Os03g60524Os.29987.1.S1_at6/113+34343696..34344553transposon protein, putative, unclassified
LOC_Os03g60524Os.43567.1.S1_x_at3/113+34343696..34344553transposon protein, putative, unclassified
LOC_Os03g60524Os.38172.1.S1_x_at2/113+34343696..34344553transposon protein, putative, unclassified
LOC_Os03g60530Os.9042.1.S1_at10/113+34346027..34349308Ras-related protein ARA-3, putative, expressed
LOC_Os03g60540OsAffx.13562.1.S1_at11/113+34349796..34350356Zinc finger, C2H2 type family protein
LOC_Os03g60550Os.17427.1.S1_at11/113+34351774..34358073ThiF family protein, expressed
LOC_Os03g60550OsAffx.25657.1.S1_s_at1/113+34351774..34358073ThiF family protein, expressed
LOC_Os03g60560Os.28441.1.S1_at11/113+34363114..34364034Zinc finger, C2H2 type family protein, expressed
LOC_Os03g60570Os.15874.1.A1_at11/113+34366638..34367547Zinc finger, C2H2 type family protein, expressed
LOC_Os03g60580Os.39973.1.S1_s_at11/113+34369405..34370315Actin-depolymerizing factor 4, putative, expressed
LOC_Os03g60590Os.12749.1.S1_s_at11/113+34370595..34373158Actin-depolymerizing factor 3, putative, expressed
LOC_Os03g60600Os.16870.1.A1_at11/113+34373945..34377386Zinc knuckle family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13562.1.S1_at--1128--1291Chr03:34350301..34350325 (25 bp)
AGATGGTGGACAGCGCAAGCATAGC
LOC_Os03g60540
OsAffx.13562.1.S1_at--224--8631Chr03:34350298..34350322 (25 bp)
TGGTGGACAGCGCAAGCATAGCTCA
LOC_Os03g60540
OsAffx.13562.1.S1_at--324--8531Chr03:34350295..34350319 (25 bp)
TGGACAGCGCAAGCATAGCTCAGGA
LOC_Os03g60540
OsAffx.13562.1.S1_at--147--4591Chr03:34350289..34350313 (25 bp)
GCGCAAGCATAGCTCAGGAGGTCAT
LOC_Os03g60540
OsAffx.13562.1.S1_at--518--3571Chr03:34350282..34350306 (25 bp)
CATAGCTCAGGAGGTCATGCTGCTC
LOC_Os03g60540
OsAffx.13562.1.S1_at--1029--9631Chr03:34350276..34350300 (25 bp)
TCAGGAGGTCATGCTGCTCCTCGCG
LOC_Os03g60540
OsAffx.13562.1.S1_at--872--911Chr03:34350205..34350229 (25 bp)
AGGCTCCGCGCGTCTTCGAGTGCAA
LOC_Os03g60540
OsAffx.13562.1.S1_at--9--7331Chr03:34350177..34350201 (25 bp)
GTGCAGGCGCCGGTTCCCGTCGTTC
LOC_Os03g60540
OsAffx.13562.1.S1_at--384--8011Chr03:34350057..34350081 (25 bp)
GGAGGCGGGTGTCGCGCTCTCGCTC
LOC_Os03g60540
OsAffx.13562.1.S1_at--997--5871Chr03:34349867..34349891 (25 bp)
GAGCGGAATCCACGCGAGGCGAGGG
LOC_Os03g60540
OsAffx.13562.1.S1_at--167--8651Chr03:34349841..34349865 (25 bp)
TGTGGTTGGCTTGGACCTGAACGCT
LOC_Os03g60540
Target Sequence 
AGATGGTGGACAGCGCAAGCATAGCTCAGGAGGTCATGCTGCTCCTCGCGCGGAGCGGCGGCGGCGGCGCCGGCTATGTC
GTCGGCCACGGCGGCGAGGCTCCGCGCGTCTTCGAGTGCAAGACGTGCAGGCGCCGGTTCCCGTCGTTCCAGGCGCTCGG
CGGCCACCGCGCGAGCCACAAGCGGCCGCGGGGTGGTGGCGGTGGTGGCGCGGCCGCCGCCGTAGCCGCCGCGGCGGGCG
AGGGGGAGGCGGGTGTCGCGCTCTCGCTCGCGGCGGGGACGCCGGCCGTGAAGGCCTCACGCGCGCACGGGTGCGCGGTG
TGCGGCGTGGAGTTCGCGCTCGGGCAGGCGCTCGGCGGCCACATGCGGCGGCACCGCATCGCCGGCGCCGAGGCCGACGA
GGCGGTGAGCGCCCGCGGCGGCGAGCCGGCGCCCGAGCGGAATCCACGCGAGGCGAGGGGTGTGGTTGGCTTGGACCTGA
ACGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13562.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis