Browse Element(s) Details


OsAffx.13578.1.S1_at

Description tigr:9631.m06132
TID=OsAffx.13578.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative myb-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6210011/11Myb-like DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62070Os.19742.1.S1_at1/113+35103640..35107408IAA-amino acid hydrolase 1, putative, expressed
LOC_Os03g62070Os.10435.1.S1_at1/113+35103640..35107408IAA-amino acid hydrolase 1, putative, expressed
LOC_Os03g62080Os.52608.1.S1_at11/113+35107535..35113012mRNA decapping enzyme, putative, expressed
LOC_Os03g62080OsAffx.22644.1.S1_at1/113+35107535..35113012mRNA decapping enzyme, putative, expressed
LOC_Os03g62090Os.4857.1.S1_at10/113+35116690..35122248Cellulose synthase A catalytic subunit 6, putative, expressed
LOC_Os03g62100OsAffx.13578.1.S1_at11/113+35128356..35129480Myb-like DNA-binding domain containing protein
LOC_Os03g62110Os.16788.1.S1_at11/113+35129728..35136402nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os03g62110Os.49772.1.S1_s_at11/113+35129728..35136402nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os03g62110Os.57290.1.S1_at10/113+35129728..35136402nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os03g62120OsAffx.13579.1.S1_at11/113+35137617..35140311DnaJ domain containing protein
LOC_Os03g62130OsAffx.13580.1.S1_at11/113+35141491..35142321DnaJ domain containing protein
LOC_Os03g62140OsAffx.3669.1.S1_at11/113+35144660..35145523DnaJ domain containing protein
LOC_Os03g62150OsAffx.13581.1.S1_at11/113+35146476..35147264DnaJ domain containing protein
LOC_Os03g62160Os.7347.1.S1_at11/113+35147432..35150284expressed protein
LOC_Os03g62160Os.17465.1.S1_x_at1/113+35147432..35150284expressed protein
LOC_Os03g62170Os.24911.1.S1_at10/113+35151821..35157202Streptomyces cyclase/dehydrase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13578.1.S1_at--8--3411Chr03:35129395..35129419 (25 bp)
CAGCTTGTAGATGGACGAGGCAGAA
LOC_Os03g62100
OsAffx.13578.1.S1_at--384--6351Chr03:35129341..35129365 (25 bp)
GATGCGCCATGAACCGGCAGTGCGT
LOC_Os03g62100
OsAffx.13578.1.S1_at--1068--3891Chr03:35129205..35129229 (25 bp)
CTGGGATGCGGAAGACCCTGCAATT
LOC_Os03g62100
OsAffx.13578.1.S1_at--988--1771Chr03:35128564..35128585 (22 bp)
ACCGGCAGTGCCTACGAGGGATTGA
LOC_Os03g62100
OsAffx.13578.1.S1_at--1015--1271Chr03:35128537..35128561 (25 bp)
AGATCGGGCACGGTCGTTGGACACA
LOC_Os03g62100
OsAffx.13578.1.S1_at--97--4051Chr03:35128507..35128531 (25 bp)
CGATAGAGTATGTTCCATCAAGGAC
LOC_Os03g62100
OsAffx.13578.1.S1_at--1113--2911Chr03:35128488..35128512 (25 bp)
AAGGACACCGATACAAATTGCCAGC
LOC_Os03g62100
OsAffx.13578.1.S1_at--114--2251Chr03:35128474..35128498 (25 bp)
AAATTGCCAGCCATACCCAGAAGTA
LOC_Os03g62100
OsAffx.13578.1.S1_at--982--5331Chr03:35128455..35128479 (25 bp)
GAAGTATTTTCTCCGGATGGCCAAG
LOC_Os03g62100
OsAffx.13578.1.S1_at--1097--871Chr03:35128439..35128463 (25 bp)
ATGGCCAAGCCCAAGGAGGATCGCA
LOC_Os03g62100
OsAffx.13578.1.S1_at--603--10151Chr03:35128388..35128412 (25 bp)
TATCATCTTCATCTGCCTAATGCTG
LOC_Os03g62100
Target Sequence 
CAGCTTGTAGATGGACGAGGCAGAAGGACAAGTTACTGGAGACGCTGGTGGCGCGATGCGCCATGAACCGGCAGTGCGTG
GGCGGCTGGGACGCCATCGCCGCCGCCTTCGGGGACGACAGGACGGCGGCGCAGGTGGAGCAGCGGTACGGGGAGATAGC
CGCGGAGGTGAGACGCGTCATGGAGGAGCCCTGGGATGCGGAAGACCCTGCAATTGCAGCAGCAGCCGCCGCCGTGCCGG
CGGCGCCGGTGAAGCATGCAGCGGCGGGGCCGGGGAGCGATGGCGGCGGCGAGGAGGGGAAGGTGGTCGTGGAGAAGAAG
TCAGGGATATGGAGTGAGGAAGAGCACCGGCAGTGCCTACGAGGGATTGAAGAGATCGGGCACGGTCGTTGGACACAGAT
ATCGATAGAGTATGTTCCATCAAGGACACCGATACAAATTGCCAGCCATACCCAGAAGTATTTTCTCCGGATGGCCAAGC
CCAAGGAGGATCGCAAGAGGAAGAGCATACACGACACCCCCTATCATCTTCATCTGCCTAATGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13578.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis